Analysis of interatomic Contacts of Structural Units in PDB entry:
7UOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UOF entry

There are 2 chains in PDB entry 7UOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 136
A
 ILE 138CYS 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7UOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 79Right-handed alpha
Helix 2
AA2
A
96 111Right-handed alpha
Helix 3
AA3
A
151 153Right-handed 310
Helix 4
AA4
A
154 160Right-handed alpha
Helix 5
AA5
A
171 182Right-handed alpha
Helix 6
AA6
A
186 194Right-handed alpha
Helix 7
AA7
A
195 217Right-handed alpha
Helix 8
AA8
A
230 242Right-handed alpha
Helix 9
AA9
A
254 260Right-handed alpha
Helix 10
AB1
A
261 263Right-handed 310
Helix 11
AB2
A
264 269Right-handed alpha
Helix 12
AB3
A
270 273Right-handed 310
Helix 13
AB4
A
280 293Right-handed alpha
Helix 14
AB5
A
307 312Right-handed alpha
Helix 15
AB6
A
327 338Right-handed alpha
Helix 16
AB7
A
342 351Right-handed alpha
Helix 17
AB8
A
351 359Right-handed alpha
Helix 18
AB9
A
384 388Right-handed 310
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There are 4 sheets in PDB entry 7UOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
13 21anti-parallel
Strand 3
A
2 10anti-parallel
Strand 4
A
40 42parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
13 21anti-parallel
Strand 3
A
2 10anti-parallel
Strand 4
A
47 50parallel
Strand 5
A
372 382anti-parallel
Strand 6
A
401 411anti-parallel
Strand 7
A
414 417anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
81 86parallel
Strand 3
A
114 117parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
136 139parallel
Strand 3
A
164 168parallel
Strand 4
A
222 225parallel
Strand 5
A
248 253parallel
Strand 6
A
298 299parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il