Analysis of interatomic Contacts of Structural Units in PDB entry:
7UP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UP4 entry

There are 2 chains in PDB entry 7UP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 415ASN 722
B
 LYS 415GLU 727
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7UP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
461 475Right-handed alpha
Helix 2
AA2
A
505 513Right-handed alpha
Helix 3
AA3
A
517 538Right-handed alpha
Helix 4
AA4
A
546 548Right-handed 310
Helix 5
AA5
A
599 617Right-handed alpha
Helix 6
AA6
A
632 643Right-handed alpha
Helix 7
AA7
A
649 653Right-handed 310
Helix 8
AA8
A
656 668Right-handed alpha
Helix 9
AA9
A
676 681Right-handed alpha
Helix 10
AB1
A
698 706Right-handed alpha
Helix 11
AB2
A
707 721Right-handed alpha
Helix 12
AB3
B
417 422Right-handed alpha
Helix 13
AB4
B
461 476Right-handed alpha
Helix 14
AB5
B
505 511Right-handed alpha
Helix 15
AB6
B
517 538Right-handed alpha
Helix 16
AB7
B
546 548Right-handed 310
Helix 17
AB8
B
599 617Right-handed alpha
Helix 18
AB9
B
632 643Right-handed alpha
Helix 19
AC1
B
656 668Right-handed alpha
Helix 20
AC2
B
676 681Right-handed alpha
Helix 21
AC3
B
682 687Right-handed 310
Helix 22
AC4
B
698 706Right-handed alpha
Helix 23
AC5
B
706 725Right-handed alpha
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There are 8 sheets in PDB entry 7UP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
438 445anti-parallel
Strand 3
A
433 435anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
438 445anti-parallel
Strand 3
A
451 458anti-parallel
Strand 4
A
493 498anti-parallel
Strand 5
A
484 489anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 541first strand
Strand 2
A
570 571anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 552first strand
Strand 2
A
561 563anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 425first strand
Strand 2
B
438 445anti-parallel
Strand 3
B
433 435anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 425first strand
Strand 2
B
438 445anti-parallel
Strand 3
B
451 458anti-parallel
Strand 4
B
493 498anti-parallel
Strand 5
B
484 489anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
540 541first strand
Strand 2
B
570 571anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 552first strand
Strand 2
B
561 563anti-parallel
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