Analysis of interatomic Contacts of Structural Units in PDB entry:
7UP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UP6 entry

There is 1 chain in PDB entry 7UP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 416SER 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7UP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
417 422Right-handed alpha
Helix 2
AA2
A
461 476Right-handed alpha
Helix 3
AA3
A
506 513Right-handed alpha
Helix 4
AA4
A
517 538Right-handed alpha
Helix 5
AA5
A
546 548Right-handed 310
Helix 6
AA6
A
599 617Right-handed alpha
Helix 7
AA7
A
633 642Right-handed alpha
Helix 8
AA8
A
649 653Right-handed 310
Helix 9
AA9
A
656 668Right-handed alpha
Helix 10
AB1
A
670 674Right-handed 310
Helix 11
AB2
A
676 682Right-handed alpha
Helix 12
AB3
A
698 706Right-handed alpha
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There are 4 sheets in PDB entry 7UP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
438 445anti-parallel
Strand 3
A
433 434anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
438 445anti-parallel
Strand 3
A
451 458anti-parallel
Strand 4
A
493 498anti-parallel
Strand 5
A
484 489anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 505first strand
Strand 2
A
550 553anti-parallel
Strand 3
A
560 563anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 541first strand
Strand 2
A
570 571anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il