Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UPB entry

There are 9 chains in PDB entry 7UPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	LYS 475
B	VAL 2	SER 113
C	VAL 2	SER 113
D	ILE 27	LYS 475
E	ILE 2	LYS 107
F	ILE 2	LYS 107
G	ILE 27	LYS 475
H	VAL 2	SER 113
L	ILE 2	LYS 107

There are 54 helices in PDB entry 7UPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	36	Right-handed alpha
Helix 2	AA2	A	65	72	Right-handed 310
Helix 3	AA3	A	74	99	Right-handed alpha
Helix 4	AA4	A	117	121	Right-handed alpha
Helix 5	AA5	A	125	146	Right-handed alpha
Helix 6	AA6	A	147	153	Right-handed alpha
Helix 7	AA7	A	175	183	Right-handed alpha
Helix 8	AA8	A	191	215	Right-handed alpha
Helix 9	AA9	A	228	232	Right-handed alpha
Helix 10	AB1	A	233	236	Right-handed 310
Helix 11	AB2	A	238	247	Right-handed alpha
Helix 12	AB3	A	252	259	Right-handed alpha
Helix 13	AB4	A	328	331	Right-handed 310
Helix 14	AB5	A	349	357	Right-handed alpha
Helix 15	AB6	A	359	363	Right-handed 310
Helix 16	AB7	A	452	475	Right-handed alpha
Helix 17	AB8	B	83	87	Right-handed 310
Helix 18	AB9	C	83	87	Right-handed 310
Helix 19	AC1	D	29	36	Right-handed alpha
Helix 20	AC2	D	68	72	Right-handed 310
Helix 21	AC3	D	74	99	Right-handed alpha
Helix 22	AC4	D	117	121	Right-handed alpha
Helix 23	AC5	D	125	146	Right-handed alpha
Helix 24	AC6	D	147	153	Right-handed alpha
Helix 25	AC7	D	175	182	Right-handed alpha
Helix 26	AC8	D	191	215	Right-handed alpha
Helix 27	AC9	D	228	232	Right-handed alpha
Helix 28	AD1	D	233	236	Right-handed 310
Helix 29	AD2	D	238	247	Right-handed alpha
Helix 30	AD3	D	252	259	Right-handed alpha
Helix 31	AD4	D	328	331	Right-handed 310
Helix 32	AD5	D	349	357	Right-handed alpha
Helix 33	AD6	D	359	363	Right-handed 310
Helix 34	AD7	D	452	475	Right-handed alpha
Helix 35	AD8	E	79	83	Right-handed 310
Helix 36	AD9	F	79	83	Right-handed 310
Helix 37	AE1	G	29	36	Right-handed alpha
Helix 38	AE2	G	68	72	Right-handed 310
Helix 39	AE3	G	74	99	Right-handed alpha
Helix 40	AE4	G	117	121	Right-handed alpha
Helix 41	AE5	G	125	146	Right-handed alpha
Helix 42	AE6	G	147	153	Right-handed alpha
Helix 43	AE7	G	175	183	Right-handed alpha
Helix 44	AE8	G	191	215	Right-handed alpha
Helix 45	AE9	G	228	232	Right-handed alpha
Helix 46	AF1	G	233	236	Right-handed 310
Helix 47	AF2	G	238	247	Right-handed alpha
Helix 48	AF3	G	252	259	Right-handed alpha
Helix 49	AF4	G	328	331	Right-handed 310
Helix 50	AF5	G	349	357	Right-handed alpha
Helix 51	AF6	G	359	363	Right-handed 310
Helix 52	AF7	G	452	475	Right-handed alpha
Helix 53	AF8	H	83	87	Right-handed 310
Helix 54	AF9	L	79	83	Right-handed 310

There are 27 sheets in PDB entry 7UPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	38	60	parallel
Strand 4	A	275	298	anti-parallel
Strand 5	A	337	340	first strand
Strand 6	A	332	333	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	263	270	anti-parallel
Strand 3	A	275	298	anti-parallel
Strand 4	A	38	60	anti-parallel
Strand 5	A	315	319	first strand
Strand 6	A	322	326	anti-parallel
Strand 7	A	345	346	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	G	426	428	parallel
Strand 4	G	419	421	anti-parallel
Strand 5	G	393	394	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	G	376	379	anti-parallel
Strand 3	G	382	385	anti-parallel
Strand 4	G	410	412	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	365	367	anti-parallel
Strand 4	A	448	449	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	D	123	124	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	419	421	anti-parallel
Strand 3	A	426	428	anti-parallel
Strand 4	D	113	116	parallel
Strand 5	D	101	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	57	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	168	173	anti-parallel
Strand 3	D	38	60	parallel
Strand 4	D	275	298	anti-parallel
Strand 5	D	337	340	first strand
Strand 6	D	332	333	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	263	270	anti-parallel
Strand 3	D	275	298	anti-parallel
Strand 4	D	38	60	anti-parallel
Strand 5	D	315	319	first strand
Strand 6	D	322	326	anti-parallel
Strand 7	D	345	346	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	307	310	anti-parallel
Strand 3	D	365	367	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	376	379	anti-parallel
Strand 4	G	123	124	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	394	first strand
Strand 2	D	419	421	anti-parallel
Strand 3	D	426	428	anti-parallel
Strand 4	G	113	116	parallel
Strand 5	G	101	103	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	71	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	84	89	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	45	50	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	71	75	anti-parallel
Strand 4	F	62	66	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	89	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	45	50	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	162	first strand
Strand 2	G	168	173	anti-parallel
Strand 3	G	38	60	parallel
Strand 4	G	275	298	anti-parallel
Strand 5	G	337	340	first strand
Strand 6	G	332	333	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	227	first strand
Strand 2	G	263	270	anti-parallel
Strand 3	G	275	298	anti-parallel
Strand 4	G	38	60	anti-parallel
Strand 5	G	315	319	first strand
Strand 6	G	322	326	anti-parallel
Strand 7	G	345	346	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	302	first strand
Strand 2	G	307	310	anti-parallel
Strand 3	G	365	367	anti-parallel
Strand 4	G	448	449	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	89	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	50	anti-parallel
Strand 6	L	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPB