Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UPD entry

There are 9 chains in PDB entry 7UPD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	ILE 474
B	GLU 1	SER 112
C	GLU 1	SER 112
D	ILE 27	ILE 474
E	ASP 1	LYS 107
F	ASP 1	LYS 107
G	ILE 27	ILE 474
H	GLU 1	SER 112
L	ASP 1	LYS 107

There are 68 helices in PDB entry 7UPD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	36	Right-handed alpha
Helix 2	AA2	A	74	100	Right-handed alpha
Helix 3	AA3	A	117	121	Right-handed alpha
Helix 4	AA4	A	125	137	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	147	153	Right-handed alpha
Helix 7	AA7	A	164	168	Right-handed 310
Helix 8	AA8	A	175	182	Right-handed alpha
Helix 9	AA9	A	191	215	Right-handed alpha
Helix 10	AB1	A	228	232	Right-handed alpha
Helix 11	AB2	A	233	236	Right-handed 310
Helix 12	AB3	A	238	247	Right-handed alpha
Helix 13	AB4	A	250	259	Right-handed alpha
Helix 14	AB5	A	328	331	Right-handed 310
Helix 15	AB6	A	349	357	Right-handed alpha
Helix 16	AB7	A	359	363	Right-handed 310
Helix 17	AB8	A	437	441	Right-handed 310
Helix 18	AB9	A	452	474	Right-handed alpha
Helix 19	AC1	B	28	32	Right-handed 310
Helix 20	AC2	B	52	54	Right-handed 310
Helix 21	AC3	B	83	87	Right-handed 310
Helix 22	AC4	C	28	32	Right-handed 310
Helix 23	AC5	C	52	54	Right-handed 310
Helix 24	AC6	C	61	64	Right-handed 310
Helix 25	AC7	C	83	87	Right-handed 310
Helix 26	AC8	D	29	36	Right-handed alpha
Helix 27	AC9	D	74	100	Right-handed alpha
Helix 28	AD1	D	117	121	Right-handed alpha
Helix 29	AD2	D	125	137	Right-handed alpha
Helix 30	AD3	D	137	146	Right-handed alpha
Helix 31	AD4	D	147	153	Right-handed alpha
Helix 32	AD5	D	164	168	Right-handed 310
Helix 33	AD6	D	175	182	Right-handed alpha
Helix 34	AD7	D	191	215	Right-handed alpha
Helix 35	AD8	D	228	232	Right-handed alpha
Helix 36	AD9	D	233	236	Right-handed 310
Helix 37	AE1	D	238	247	Right-handed alpha
Helix 38	AE2	D	250	259	Right-handed alpha
Helix 39	AE3	D	328	331	Right-handed 310
Helix 40	AE4	D	349	357	Right-handed alpha
Helix 41	AE5	D	359	363	Right-handed 310
Helix 42	AE6	D	437	441	Right-handed 310
Helix 43	AE7	D	452	474	Right-handed alpha
Helix 44	AE8	E	79	83	Right-handed 310
Helix 45	AE9	F	79	83	Right-handed 310
Helix 46	AF1	G	29	36	Right-handed alpha
Helix 47	AF2	G	74	100	Right-handed alpha
Helix 48	AF3	G	117	121	Right-handed alpha
Helix 49	AF4	G	125	137	Right-handed alpha
Helix 50	AF5	G	137	146	Right-handed alpha
Helix 51	AF6	G	147	153	Right-handed alpha
Helix 52	AF7	G	164	168	Right-handed 310
Helix 53	AF8	G	175	182	Right-handed alpha
Helix 54	AF9	G	182	187	Right-handed alpha
Helix 55	AG1	G	191	215	Right-handed alpha
Helix 56	AG2	G	228	232	Right-handed alpha
Helix 57	AG3	G	233	236	Right-handed 310
Helix 58	AG4	G	238	247	Right-handed alpha
Helix 59	AG5	G	250	259	Right-handed alpha
Helix 60	AG6	G	328	331	Right-handed 310
Helix 61	AG7	G	349	357	Right-handed alpha
Helix 62	AG8	G	359	363	Right-handed 310
Helix 63	AG9	G	437	441	Right-handed 310
Helix 64	AH1	G	452	474	Right-handed alpha
Helix 65	AH2	H	28	32	Right-handed 310
Helix 66	AH3	H	52	54	Right-handed 310
Helix 67	AH4	H	83	87	Right-handed 310
Helix 68	AH5	L	79	83	Right-handed 310

There are 30 sheets in PDB entry 7UPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	38	60	parallel
Strand 4	A	337	340	parallel
Strand 5	A	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	263	270	anti-parallel
Strand 3	A	275	287	anti-parallel
Strand 4	A	38	60	anti-parallel
Strand 5	A	291	298	anti-parallel
Strand 6	A	315	319	anti-parallel
Strand 7	A	322	326	anti-parallel
Strand 8	A	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	G	425	428	parallel
Strand 4	G	419	422	anti-parallel
Strand 5	G	393	394	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	G	376	379	anti-parallel
Strand 3	G	382	385	anti-parallel
Strand 4	G	410	412	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	D	123	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	425	428	anti-parallel
Strand 4	D	113	116	parallel
Strand 5	D	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	99	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	96	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	96	anti-parallel
Strand 4	C	99	103	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	169	173	anti-parallel
Strand 3	D	38	60	parallel
Strand 4	D	275	298	anti-parallel
Strand 5	D	337	340	first strand
Strand 6	D	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	263	270	anti-parallel
Strand 3	D	275	298	anti-parallel
Strand 4	D	38	60	anti-parallel
Strand 5	D	315	319	first strand
Strand 6	D	322	326	anti-parallel
Strand 7	D	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	307	310	anti-parallel
Strand 3	D	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	376	379	anti-parallel
Strand 4	G	123	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	394	first strand
Strand 2	D	419	422	anti-parallel
Strand 3	D	425	428	anti-parallel
Strand 4	G	113	116	parallel
Strand 5	G	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	169	173	anti-parallel
Strand 3	G	38	60	parallel
Strand 4	G	337	340	parallel
Strand 5	G	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	227	first strand
Strand 2	G	263	270	anti-parallel
Strand 3	G	275	287	anti-parallel
Strand 4	G	38	60	anti-parallel
Strand 5	G	291	298	anti-parallel
Strand 6	G	315	319	anti-parallel
Strand 7	G	322	326	anti-parallel
Strand 8	G	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	302	first strand
Strand 2	G	307	310	anti-parallel
Strand 3	G	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	99	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UPD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPD