Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UPF entry

There are 10 chains in PDB entry 7UPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 306ARG 379
B
 VAL 306ARG 379
C
 VAL 306ARG 379
D
 VAL 306ARG 379
E
 VAL 306ARG 379
F
 VAL 306ARG 379
G
 VAL 306ARG 379
H
 VAL 306ARG 379
I
 VAL 306ARG 379
J
 VAL 306ARG 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 7UPF

There are 14 sheets in PDB entry 7UPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
307 310first strand
Strand 2
C
307 310parallel
Strand 3
A
307 310parallel
Strand 4
E
307 310parallel
Strand 5
I
307 310parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
314 325first strand
Strand 2
C
314 325parallel
Strand 3
A
314 325parallel
Strand 4
E
314 325parallel
Strand 5
I
314 325parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
328 330first strand
Strand 2
C
328 330parallel
Strand 3
A
328 330parallel
Strand 4
E
328 330parallel
Strand 5
I
328 330parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
336 340first strand
Strand 2
C
336 340parallel
Strand 3
A
336 340parallel
Strand 4
E
336 340parallel
Strand 5
I
336 340parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
343 348first strand
Strand 2
C
343 348parallel
Strand 3
A
343 348parallel
Strand 4
E
343 348parallel
Strand 5
I
343 348parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
351 362first strand
Strand 2
C
351 362parallel
Strand 3
A
351 362parallel
Strand 4
E
351 362parallel
Strand 5
I
351 362parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
368 378first strand
Strand 2
C
368 378parallel
Strand 3
A
368 378parallel
Strand 4
E
368 378parallel
Strand 5
I
368 378parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
307 310first strand
Strand 2
D
307 310parallel
Strand 3
B
307 310parallel
Strand 4
F
307 310parallel
Strand 5
J
307 310parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
314 325first strand
Strand 2
D
314 325parallel
Strand 3
B
314 325parallel
Strand 4
F
314 325parallel
Strand 5
J
314 325parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
328 330first strand
Strand 2
D
328 330parallel
Strand 3
B
328 330parallel
Strand 4
F
328 330parallel
Strand 5
J
328 330parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
336 340first strand
Strand 2
D
336 340parallel
Strand 3
B
336 340parallel
Strand 4
F
336 340parallel
Strand 5
J
336 340parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
343 348first strand
Strand 2
D
343 348parallel
Strand 3
B
343 348parallel
Strand 4
F
343 348parallel
Strand 5
J
343 348parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
351 362first strand
Strand 2
D
351 362parallel
Strand 3
B
351 362parallel
Strand 4
F
351 362parallel
Strand 5
J
351 362parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
368 378first strand
Strand 2
D
368 378parallel
Strand 3
B
368 378parallel
Strand 4
F
368 378parallel
Strand 5
J
368 378parallel
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