Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UPI entry

There are 3 chains in PDB entry 7UPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5GLN 178
B
 LEU 7ALA 299
C
 VAL 64PRO 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7UPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 35Right-handed alpha
Helix 2
AA2
A
77 84Right-handed alpha
Helix 3
AA3
A
96 115Right-handed alpha
Helix 4
AA4
A
137 149Right-handed alpha
Helix 5
AA5
A
163 178Right-handed alpha
Helix 6
AA6
B
8 18Right-handed alpha
Helix 7
AA7
B
31 48Right-handed alpha
Helix 8
AA8
B
68 80Right-handed alpha
Helix 9
AA9
B
99 114Right-handed alpha
Helix 10
AB1
B
127 135Right-handed alpha
Helix 11
AB2
B
135 144Right-handed alpha
Helix 12
AB3
B
145 157Right-handed alpha
Helix 13
AB4
B
182 188Right-handed alpha
Helix 14
AB5
B
199 207Right-handed alpha
Helix 15
AB6
B
228 240Right-handed alpha
Helix 16
AB7
B
271 275Right-handed 310
Helix 17
AB8
C
88 101Right-handed alpha
Helix 18
AB9
C
116 122Right-handed 310
Helix 19
AC1
C
139 145Right-handed 310
Helix 20
AC2
C
162 168Right-handed 310
Helix 21
AC3
C
185 191Right-handed alpha
Helix 22
AC4
C
208 214Right-handed 310
Helix 23
AC5
C
231 237Right-handed 310
Helix 24
AC6
C
254 260Right-handed 310
Helix 25
AC7
C
277 283Right-handed 310
Helix 26
AC8
C
300 306Right-handed 310
Helix 27
AC9
C
325 330Right-handed alpha
Helix 28
AD1
C
350 355Right-handed 310
Helix 29
AD2
C
395 401Right-handed 310
Helix 30
AD3
C
418 424Right-handed 310
Helix 31
AD4
C
443 447Right-handed 310
Helix 32
AD5
C
464 470Right-handed 310
Helix 33
AD6
C
487 493Right-handed 310
Helix 34
AD7
C
510 516Right-handed 310
Helix 35
AD8
C
534 540Right-handed 310
Helix 36
AD9
C
557 564Right-handed alpha
Helix 37
AE1
C
564 576Right-handed alpha
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There are 5 sheets in PDB entry 7UPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 56first strand
Strand 2
A
59 67anti-parallel
Strand 3
A
13 20parallel
Strand 4
A
87 93parallel
Strand 5
A
121 126parallel
Strand 6
A
152 154parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
162 165parallel
Strand 3
B
169 172anti-parallel
Strand 4
B
243 246parallel
Strand 5
B
263 266parallel
Strand 6
B
255 258anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
87 89parallel
Strand 3
B
59 62parallel
Strand 4
B
280 285anti-parallel
Strand 5
B
290 296anti-parallel
Strand 6
C
65 68parallel
Strand 7
C
71 73anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
225 227parallel
Strand 3
B
216 218anti-parallel
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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 106first strand
Strand 2
C
127 129parallel
Strand 3
C
150 152parallel
Strand 4
C
173 175parallel
Strand 5
C
196 198parallel
Strand 6
C
219 221parallel
Strand 7
C
242 244parallel
Strand 8
C
265 267parallel
Strand 9
C
288 290parallel
Strand 10
C
311 313parallel
Strand 11
C
335 337parallel
Strand 12
C
359 361parallel
Strand 13
C
383 385parallel
Strand 14
C
406 408parallel
Strand 15
C
429 431parallel
Strand 16
C
452 454parallel
Strand 17
C
475 477parallel
Strand 18
C
498 500parallel
Strand 19
C
521 523parallel
Strand 20
C
545 547parallel
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