Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UPM entry

There are 2 chains in PDB entry 7UPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 55PHE 312
B
 GLN 3SER 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7UPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 101Right-handed alpha
Helix 2
AA2
A
102 106Right-handed 310
Helix 3
AA3
A
136 145Right-handed alpha
Helix 4
AA4
A
148 169Right-handed alpha
Helix 5
AA5
A
215 219Right-handed 310
Helix 6
AA6
A
220 225Right-handed alpha
Helix 7
AA7
A
232 250Right-handed alpha
Helix 8
AA8
A
258 269Right-handed alpha
Helix 9
AA9
A
278 290Right-handed alpha
Helix 10
AB1
A
298 303Right-handed alpha
Helix 11
AB2
B
61 64Right-handed 310
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There are 7 sheets in PDB entry 7UPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
86 93anti-parallel
Strand 5
A
125 131anti-parallel
Strand 6
A
116 121anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
200 201anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
191 193anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
230 231anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
17 24anti-parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
116 121parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
116 121parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
109 112anti-parallel
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