Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UPP entry

There are 3 chains in PDB entry 7UPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 316
B
 SER 1GLY 312
C
 LYS 1SER 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7UPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 17Right-handed alpha
Helix 2
AA2
A
20 36Right-handed alpha
Helix 3
AA3
A
38 55Right-handed alpha
Helix 4
AA4
A
58 74Right-handed alpha
Helix 5
AA5
A
76 93Right-handed alpha
Helix 6
AA6
A
96 112Right-handed alpha
Helix 7
AA7
A
114 131Right-handed alpha
Helix 8
AA8
A
134 150Right-handed alpha
Helix 9
AA9
A
152 169Right-handed alpha
Helix 10
AB1
A
172 188Right-handed alpha
Helix 11
AB2
A
190 207Right-handed alpha
Helix 12
AB3
A
210 226Right-handed alpha
Helix 13
AB4
A
228 245Right-handed alpha
Helix 14
AB5
A
248 277Right-handed alpha
Helix 15
AB6
A
283 316Right-handed alpha
Helix 16
AB7
B
2 17Right-handed alpha
Helix 17
AB8
B
20 36Right-handed alpha
Helix 18
AB9
B
38 55Right-handed alpha
Helix 19
AC1
B
58 74Right-handed alpha
Helix 20
AC2
B
76 93Right-handed alpha
Helix 21
AC3
B
96 112Right-handed alpha
Helix 22
AC4
B
114 131Right-handed alpha
Helix 23
AC5
B
134 150Right-handed alpha
Helix 24
AC6
B
152 169Right-handed alpha
Helix 25
AC7
B
172 188Right-handed alpha
Helix 26
AC8
B
190 207Right-handed alpha
Helix 27
AC9
B
210 226Right-handed alpha
Helix 28
AD1
B
228 273Right-handed alpha
Helix 29
AD2
B
279 312Right-handed alpha
Helix 30
AD3
C
2 36Right-handed alpha
Helix 31
AD4
C
38 75Right-handed alpha
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There are no sheets in PDB entry 7UPP
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