Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UPR entry

There are 7 chains in PDB entry 7UPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 44PHE 351
B
 ALA 55PHE 351
E
 PRO 43PHE 351
D
 PRO 43PHE 351
F
 LEU 69LYS 347
A
 MET 86LYS 347
G
 UNK 1UNK 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 7UPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
47 53Right-handed alpha
Helix 2
AA2
C
56 61Right-handed alpha
Helix 3
AA3
C
70 78Right-handed alpha
Helix 4
AA4
C
82 86Right-handed 310
Helix 5
AA5
C
89 93Right-handed 310
Helix 6
AA6
C
97 107Right-handed alpha
Helix 7
AA7
C
107 112Right-handed alpha
Helix 8
AA8
C
113 118Right-handed alpha
Helix 9
AA9
C
138 149Right-handed alpha
Helix 10
AB1
C
169 184Right-handed alpha
Helix 11
AB2
C
206 221Right-handed alpha
Helix 12
AB3
C
239 243Right-handed 310
Helix 13
AB4
C
245 251Right-handed alpha
Helix 14
AB5
C
261 273Right-handed alpha
Helix 15
AB6
C
283 292Right-handed alpha
Helix 16
AB7
C
297 316Right-handed alpha
Helix 17
AB8
C
333 347Right-handed alpha
Helix 18
AB9
C
348 350Right-handed 310
Helix 19
AC1
B
58 63Right-handed alpha
Helix 20
AC2
B
70 78Right-handed alpha
Helix 21
AC3
B
82 86Right-handed 310
Helix 22
AC4
B
96 108Right-handed alpha
Helix 23
AC5
B
108 113Right-handed alpha
Helix 24
AC6
B
138 150Right-handed alpha
Helix 25
AC7
B
158 162Right-handed 310
Helix 26
AC8
B
165 169Right-handed 310
Helix 27
AC9
B
170 184Right-handed alpha
Helix 28
AD1
B
193 198Right-handed alpha
Helix 29
AD2
B
211 223Right-handed alpha
Helix 30
AD3
B
246 251Right-handed alpha
Helix 31
AD4
B
261 273Right-handed alpha
Helix 32
AD5
B
283 292Right-handed alpha
Helix 33
AD6
B
295 316Right-handed alpha
Helix 34
AD7
B
332 347Right-handed alpha
Helix 35
AD8
B
348 351Right-handed 310
Helix 36
AD9
E
46 63Right-handed alpha
Helix 37
AE1
E
70 78Right-handed alpha
Helix 38
AE2
E
89 93Right-handed 310
Helix 39
AE3
E
97 107Right-handed alpha
Helix 40
AE4
E
107 112Right-handed alpha
Helix 41
AE5
E
138 147Right-handed alpha
Helix 42
AE6
E
169 184Right-handed alpha
Helix 43
AE7
E
193 198Right-handed alpha
Helix 44
AE8
E
206 221Right-handed alpha
Helix 45
AE9
E
246 251Right-handed alpha
Helix 46
AF1
E
261 273Right-handed alpha
Helix 47
AF2
E
283 292Right-handed alpha
Helix 48
AF3
E
297 316Right-handed alpha
Helix 49
AF4
E
334 350Right-handed alpha
Helix 50
AF5
D
47 51Right-handed 310
Helix 51
AF6
D
56 61Right-handed alpha
Helix 52
AF7
D
70 78Right-handed alpha
Helix 53
AF8
D
82 86Right-handed 310
Helix 54
AF9
D
89 93Right-handed 310
Helix 55
AG1
D
97 107Right-handed alpha
Helix 56
AG2
D
107 112Right-handed alpha
Helix 57
AG3
D
113 118Right-handed alpha
Helix 58
AG4
D
138 150Right-handed alpha
Helix 59
AG5
D
169 184Right-handed alpha
Helix 60
AG6
D
193 198Right-handed alpha
Helix 61
AG7
D
206 221Right-handed alpha
Helix 62
AG8
D
246 251Right-handed alpha
Helix 63
AG9
D
261 273Right-handed alpha
Helix 64
AH1
D
283 292Right-handed alpha
Helix 65
AH2
D
295 317Right-handed alpha
Helix 66
AH3
D
333 348Right-handed alpha
Helix 67
AH4
F
70 77Right-handed alpha
Helix 68
AH5
F
78 80Right-handed 310
Helix 69
AH6
F
97 112Right-handed alpha
Helix 70
AH7
F
138 150Right-handed alpha
Helix 71
AH8
F
170 184Right-handed alpha
Helix 72
AH9
F
193 198Right-handed alpha
Helix 73
AI1
F
209 221Right-handed alpha
Helix 74
AI2
F
263 273Right-handed alpha
Helix 75
AI3
F
295 313Right-handed alpha
Helix 76
AI4
F
314 317Right-handed 310
Helix 77
AI5
F
332 347Right-handed alpha
Helix 78
AI6
A
96 107Right-handed alpha
Helix 79
AI7
A
138 150Right-handed alpha
Helix 80
AI8
A
170 184Right-handed alpha
Helix 81
AI9
A
209 227Right-handed alpha
Helix 82
AJ1
A
261 274Right-handed alpha
Helix 83
AJ2
A
283 292Right-handed alpha
Helix 84
AJ3
A
295 316Right-handed alpha
Helix 85
AJ4
A
332 347Right-handed alpha
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There are 7 sheets in PDB entry 7UPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 156first strand
Strand 2
C
187 190parallel
Strand 3
C
231 236parallel
Strand 4
C
129 132parallel
Strand 5
C
253 256parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
187 191parallel
Strand 3
B
232 237parallel
Strand 4
B
129 132parallel
Strand 5
B
253 256parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 156first strand
Strand 2
E
187 190parallel
Strand 3
E
231 237parallel
Strand 4
E
129 132parallel
Strand 5
E
253 256parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 156first strand
Strand 2
D
187 190parallel
Strand 3
D
231 236parallel
Strand 4
D
129 132parallel
Strand 5
D
253 256parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
155 156first strand
Strand 2
F
189 191parallel
Strand 3
F
233 237parallel
Strand 4
F
130 132parallel
Strand 5
F
254 256parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
253 256parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
187 190parallel
Strand 3
A
231 233parallel
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