Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UPT entry

There are 7 chains in PDB entry 7UPT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 69	PHE 351
B	PRO 43	PHE 351
C	PRO 43	PHE 351
D	LYS 46	PHE 351
E	LYS 46	PHE 351
F	LEU 69	PHE 351
G	UNK 1	UNK 10

There are 91 helices in PDB entry 7UPT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	78	Right-handed alpha
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	96	107	Right-handed alpha
Helix 5	AA5	A	107	112	Right-handed alpha
Helix 6	AA6	A	113	118	Right-handed alpha
Helix 7	AA7	A	140	149	Right-handed alpha
Helix 8	AA8	A	168	184	Right-handed alpha
Helix 9	AA9	A	193	198	Right-handed alpha
Helix 10	AB1	A	206	222	Right-handed alpha
Helix 11	AB2	A	245	251	Right-handed alpha
Helix 12	AB3	A	263	274	Right-handed alpha
Helix 13	AB4	A	283	290	Right-handed alpha
Helix 14	AB5	A	295	316	Right-handed alpha
Helix 15	AB6	A	334	348	Right-handed alpha
Helix 16	AB7	B	47	63	Right-handed alpha
Helix 17	AB8	B	71	77	Right-handed alpha
Helix 18	AB9	B	78	80	Right-handed 310
Helix 19	AC1	B	97	107	Right-handed alpha
Helix 20	AC2	B	107	112	Right-handed alpha
Helix 21	AC3	B	113	117	Right-handed 310
Helix 22	AC4	B	138	147	Right-handed alpha
Helix 23	AC5	B	158	163	Right-handed alpha
Helix 24	AC6	B	169	184	Right-handed alpha
Helix 25	AC7	B	193	198	Right-handed alpha
Helix 26	AC8	B	206	222	Right-handed alpha
Helix 27	AC9	B	239	243	Right-handed 310
Helix 28	AD1	B	245	251	Right-handed alpha
Helix 29	AD2	B	261	273	Right-handed alpha
Helix 30	AD3	B	283	291	Right-handed alpha
Helix 31	AD4	B	295	315	Right-handed alpha
Helix 32	AD5	B	333	348	Right-handed alpha
Helix 33	AD6	C	47	63	Right-handed alpha
Helix 34	AD7	C	71	78	Right-handed alpha
Helix 35	AD8	C	82	86	Right-handed 310
Helix 36	AD9	C	97	107	Right-handed alpha
Helix 37	AE1	C	108	113	Right-handed alpha
Helix 38	AE2	C	138	150	Right-handed alpha
Helix 39	AE3	C	158	162	Right-handed 310
Helix 40	AE4	C	168	184	Right-handed alpha
Helix 41	AE5	C	193	198	Right-handed alpha
Helix 42	AE6	C	206	222	Right-handed alpha
Helix 43	AE7	C	239	243	Right-handed 310
Helix 44	AE8	C	246	251	Right-handed alpha
Helix 45	AE9	C	261	273	Right-handed alpha
Helix 46	AF1	C	283	291	Right-handed alpha
Helix 47	AF2	C	295	317	Right-handed alpha
Helix 48	AF3	C	333	348	Right-handed alpha
Helix 49	AF4	D	47	62	Right-handed alpha
Helix 50	AF5	D	71	78	Right-handed alpha
Helix 51	AF6	D	89	93	Right-handed 310
Helix 52	AF7	D	96	112	Right-handed alpha
Helix 53	AF8	D	113	117	Right-handed 310
Helix 54	AF9	D	138	150	Right-handed alpha
Helix 55	AG1	D	168	184	Right-handed alpha
Helix 56	AG2	D	193	198	Right-handed alpha
Helix 57	AG3	D	206	222	Right-handed alpha
Helix 58	AG4	D	245	251	Right-handed alpha
Helix 59	AG5	D	261	273	Right-handed alpha
Helix 60	AG6	D	283	291	Right-handed alpha
Helix 61	AG7	D	295	313	Right-handed alpha
Helix 62	AG8	D	333	350	Right-handed alpha
Helix 63	AG9	E	47	62	Right-handed alpha
Helix 64	AH1	E	71	78	Right-handed alpha
Helix 65	AH2	E	89	93	Right-handed 310
Helix 66	AH3	E	96	112	Right-handed alpha
Helix 67	AH4	E	113	118	Right-handed alpha
Helix 68	AH5	E	138	147	Right-handed alpha
Helix 69	AH6	E	158	163	Right-handed alpha
Helix 70	AH7	E	168	184	Right-handed alpha
Helix 71	AH8	E	193	198	Right-handed alpha
Helix 72	AH9	E	206	222	Right-handed alpha
Helix 73	AI1	E	246	251	Right-handed alpha
Helix 74	AI2	E	261	273	Right-handed alpha
Helix 75	AI3	E	283	291	Right-handed alpha
Helix 76	AI4	E	295	313	Right-handed alpha
Helix 77	AI5	E	333	347	Right-handed alpha
Helix 78	AI6	F	71	78	Right-handed alpha
Helix 79	AI7	F	82	86	Right-handed 310
Helix 80	AI8	F	89	93	Right-handed 310
Helix 81	AI9	F	96	107	Right-handed alpha
Helix 82	AJ1	F	107	112	Right-handed alpha
Helix 83	AJ2	F	138	145	Right-handed alpha
Helix 84	AJ3	F	158	162	Right-handed 310
Helix 85	AJ4	F	169	184	Right-handed alpha
Helix 86	AJ5	F	211	220	Right-handed alpha
Helix 87	AJ6	F	245	251	Right-handed alpha
Helix 88	AJ7	F	261	273	Right-handed alpha
Helix 89	AJ8	F	283	291	Right-handed alpha
Helix 90	AJ9	F	295	316	Right-handed alpha
Helix 91	AK1	F	333	348	Right-handed alpha

There are 8 sheets in PDB entry 7UPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	156	first strand
Strand 2	A	188	191	parallel
Strand 3	A	232	236	parallel
Strand 4	A	129	131	parallel
Strand 5	A	253	255	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	187	191	parallel
Strand 3	B	231	236	parallel
Strand 4	B	129	132	parallel
Strand 5	B	253	256	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	253	256	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	187	192	parallel
Strand 3	C	231	236	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	254	256	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	156	first strand
Strand 2	D	188	192	parallel
Strand 3	D	232	236	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	156	first strand
Strand 2	E	187	192	parallel
Strand 3	E	231	236	parallel
Strand 4	E	129	132	parallel
Strand 5	E	253	256	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	156	first strand
Strand 2	F	189	192	parallel
Strand 3	F	234	236	parallel
Strand 4	F	129	132	parallel
Strand 5	F	253	256	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UPT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPT