Analysis of interatomic Contacts of Structural Units in PDB entry:
7UPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UPV entry

There is 1 chain in PDB entry 7UPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 202ASN 648
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7UPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 247Right-handed alpha
Helix 2
AA2
A
258 262Right-handed alpha
Helix 3
AA3
A
271 284Right-handed alpha
Helix 4
AA4
A
310 320Right-handed alpha
Helix 5
AA5
A
339 342Right-handed 310
Helix 6
AA6
A
351 373Right-handed alpha
Helix 7
AA7
A
412 426Right-handed alpha
Helix 8
AA8
A
427 432Right-handed 310
Helix 9
AA9
A
444 448Right-handed 310
Helix 10
AB1
A
455 458Right-handed 310
Helix 11
AB2
A
459 488Right-handed alpha
Helix 12
AB3
A
509 516Right-handed alpha
Helix 13
AB4
A
526 535Right-handed alpha
Helix 14
AB5
A
549 554Right-handed alpha
Helix 15
AB6
A
562 577Right-handed alpha
Helix 16
AB7
A
591 603Right-handed alpha
Helix 17
AB8
A
628 642Right-handed alpha
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There are 2 sheets in PDB entry 7UPV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
251 257parallel
Strand 3
A
287 293parallel
Strand 4
A
376 382parallel
Strand 5
A
493 497parallel
Strand 6
A
539 544parallel
Strand 7
A
581 586parallel
Strand 8
A
615 619parallel
Strand 9
A
216 219parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
332 337anti-parallel
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