Analysis of interatomic Contacts of Structural Units in PDB entry:
7UQC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UQC entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 7UQC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	CYS 219
B	GLN 1	SER 218
C	ALA 370	HIS 375
C	PRO 378	ARG 389
G	ASP 1	GLU 218
H	GLN 1	SER 218
I	ASP 1	CYS 219
J	GLN 1	LYS 217
D	ASP 1	GLU 218
E	GLN 1	LYS 217
F	ALA 370	HIS 375
F	PRO 378	ARG 389

There are 39 helices in PDB entry 7UQC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	84	88	Right-handed 310
Helix 2	AA2	A	126	131	Right-handed alpha
Helix 3	AA3	A	188	193	Right-handed alpha
Helix 4	AA4	B	28	32	Right-handed 310
Helix 5	AA5	B	62	65	Right-handed 310
Helix 6	AA6	B	87	91	Right-handed 310
Helix 7	AA7	B	159	161	Right-handed 310
Helix 8	AA8	B	190	195	Right-handed alpha
Helix 9	AA9	B	204	207	Right-handed 310
Helix 10	AB1	G	84	88	Right-handed 310
Helix 11	AB2	G	126	133	Right-handed alpha
Helix 12	AB3	G	188	192	Right-handed alpha
Helix 13	AB4	H	28	32	Right-handed 310
Helix 14	AB5	H	62	65	Right-handed 310
Helix 15	AB6	H	74	76	Right-handed 310
Helix 16	AB7	H	87	91	Right-handed 310
Helix 17	AB8	H	159	161	Right-handed 310
Helix 18	AB9	H	190	192	Right-handed 310
Helix 19	AC1	H	204	207	Right-handed 310
Helix 20	AC2	I	84	88	Right-handed 310
Helix 21	AC3	I	126	131	Right-handed alpha
Helix 22	AC4	I	188	194	Right-handed alpha
Helix 23	AC5	J	28	32	Right-handed 310
Helix 24	AC6	J	62	65	Right-handed 310
Helix 25	AC7	J	74	76	Right-handed 310
Helix 26	AC8	J	87	91	Right-handed 310
Helix 27	AC9	J	159	161	Right-handed 310
Helix 28	AD1	J	190	192	Right-handed 310
Helix 29	AD2	J	204	207	Right-handed 310
Helix 30	AD3	D	84	88	Right-handed 310
Helix 31	AD4	D	126	133	Right-handed alpha
Helix 32	AD5	D	188	194	Right-handed alpha
Helix 33	AD6	E	28	32	Right-handed 310
Helix 34	AD7	E	62	65	Right-handed 310
Helix 35	AD8	E	74	76	Right-handed 310
Helix 36	AD9	E	87	91	Right-handed 310
Helix 37	AE1	E	159	161	Right-handed 310
Helix 38	AE2	E	190	192	Right-handed 310
Helix 39	AE3	E	204	207	Right-handed 310

There are 42 sheets in PDB entry 7UQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	107	112	parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	38	43	anti-parallel
Strand 5	A	50	54	anti-parallel
Strand 6	A	58	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	107	112	parallel
Strand 3	A	89	95	anti-parallel
Strand 4	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	134	144	anti-parallel
Strand 3	A	178	187	anti-parallel
Strand 4	A	164	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	196	202	anti-parallel
Strand 4	A	210	215	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	110	114	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	138	148	anti-parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	166	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	138	148	anti-parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	172	173	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	75	80	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	107	112	parallel
Strand 3	G	89	95	anti-parallel
Strand 4	G	38	43	anti-parallel
Strand 5	G	50	54	anti-parallel
Strand 6	G	58	59	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	107	112	parallel
Strand 3	G	89	95	anti-parallel
Strand 4	G	102	103	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	123	first strand
Strand 2	G	134	144	anti-parallel
Strand 3	G	178	187	anti-parallel
Strand 4	G	164	168	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	159	first strand
Strand 2	G	149	155	anti-parallel
Strand 3	G	196	203	anti-parallel
Strand 4	G	210	215	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	110	114	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	110	114	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	105	106	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	179	188	anti-parallel
Strand 4	H	166	168	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	179	188	anti-parallel
Strand 4	H	172	173	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	157	first strand
Strand 2	H	197	203	anti-parallel
Strand 3	H	208	214	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	75	80	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	107	112	parallel
Strand 3	I	89	95	anti-parallel
Strand 4	I	38	43	anti-parallel
Strand 5	I	50	54	anti-parallel
Strand 6	I	58	59	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	107	112	parallel
Strand 3	I	89	95	anti-parallel
Strand 4	I	102	103	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	123	first strand
Strand 2	I	134	144	anti-parallel
Strand 3	I	178	187	anti-parallel
Strand 4	I	164	168	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	159	first strand
Strand 2	I	150	155	anti-parallel
Strand 3	I	196	202	anti-parallel
Strand 4	I	210	215	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	110	114	parallel
Strand 3	J	92	98	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	110	114	parallel
Strand 3	J	92	98	anti-parallel
Strand 4	J	105	106	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	127	first strand
Strand 2	J	138	148	anti-parallel
Strand 3	J	179	188	anti-parallel
Strand 4	J	166	168	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	127	first strand
Strand 2	J	138	148	anti-parallel
Strand 3	J	179	188	anti-parallel
Strand 4	J	172	173	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	154	157	first strand
Strand 2	J	198	203	anti-parallel
Strand 3	J	208	213	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	75	80	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	111	parallel
Strand 3	D	89	95	anti-parallel
Strand 4	D	38	43	anti-parallel
Strand 5	D	50	54	anti-parallel
Strand 6	D	58	59	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	111	parallel
Strand 3	D	89	95	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	134	144	anti-parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	164	168	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	196	202	anti-parallel
Strand 4	D	210	215	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	110	114	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	138	148	anti-parallel
Strand 3	E	179	188	anti-parallel
Strand 4	E	166	168	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	138	148	anti-parallel
Strand 3	E	179	188	anti-parallel
Strand 4	E	172	173	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	157	first strand
Strand 2	E	197	203	anti-parallel
Strand 3	E	208	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UQC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UQC