Analysis of interatomic Contacts of Structural Units in PDB entry:
7UR4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UR4 entry

There are 2 chains in PDB entry 7UR4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	SER 466
B	LEU 19	ILE 260

There are 54 helices in PDB entry 7UR4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	81	Right-handed alpha
Helix 2	AA2	A	104	129	Right-handed alpha
Helix 3	AA3	A	130	141	Right-handed alpha
Helix 4	AA4	A	163	172	Right-handed alpha
Helix 5	AA5	A	172	177	Right-handed alpha
Helix 6	AA6	A	186	209	Right-handed alpha
Helix 7	AA7	A	223	232	Right-handed alpha
Helix 8	AA8	A	237	247	Right-handed alpha
Helix 9	AA9	A	247	255	Right-handed alpha
Helix 10	AB1	A	338	340	Right-handed 310
Helix 11	AB2	A	344	352	Right-handed 310
Helix 12	AB3	A	441	445	Right-handed 310
Helix 13	AB4	A	461	463	Right-handed 310
Helix 14	AB5	B	54	58	Right-handed 310
Helix 15	AB6	B	65	81	Right-handed alpha
Helix 16	AB7	B	82	84	Right-handed 310
Helix 17	AB8	B	104	129	Right-handed alpha
Helix 18	AB9	B	130	141	Right-handed alpha
Helix 19	AC1	B	163	172	Right-handed alpha
Helix 20	AC2	B	172	177	Right-handed alpha
Helix 21	AC3	B	186	209	Right-handed alpha
Helix 22	AC4	B	223	233	Right-handed alpha
Helix 23	AC5	B	237	246	Right-handed alpha
Helix 24	AC6	B	247	255	Right-handed alpha
Helix 25	AC7	B	338	340	Right-handed 310
Helix 26	AC8	B	346	352	Right-handed 310
Helix 27	AC9	B	441	445	Right-handed 310
Helix 28	AD1	B	461	463	Right-handed 310
Helix 29	AD2	C	54	58	Right-handed 310
Helix 30	AD3	C	65	83	Right-handed alpha
Helix 31	AD4	C	104	129	Right-handed alpha
Helix 32	AD5	C	130	141	Right-handed alpha
Helix 33	AD6	C	163	172	Right-handed alpha
Helix 34	AD7	C	172	177	Right-handed alpha
Helix 35	AD8	C	178	181	Right-handed 310
Helix 36	AD9	C	186	210	Right-handed alpha
Helix 37	AE1	C	223	232	Right-handed alpha
Helix 38	AE2	C	237	246	Right-handed alpha
Helix 39	AE3	C	247	255	Right-handed alpha
Helix 40	AE4	C	338	340	Right-handed 310
Helix 41	AE5	C	344	352	Right-handed 310
Helix 42	AE6	C	441	446	Right-handed alpha
Helix 43	AE7	C	461	463	Right-handed 310
Helix 44	AE8	F	28	32	Right-handed 310
Helix 45	AE9	F	83	87	Right-handed 310
Helix 46	AF1	G	26	30	Right-handed 310
Helix 47	AF2	G	79	83	Right-handed 310
Helix 48	AF3	H	83	87	Right-handed 310
Helix 49	AF4	I	28	32	Right-handed 310
Helix 50	AF5	I	83	87	Right-handed 310
Helix 51	AF6	J	26	30	Right-handed 310
Helix 52	AF7	J	79	83	Right-handed 310
Helix 53	AF8	L	26	30	Right-handed 310
Helix 54	AF9	L	79	83	Right-handed 310

There are 32 sheets in PDB entry 7UR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	332	336	anti-parallel
Strand 3	A	29	40	parallel
Strand 4	A	278	288	anti-parallel
Strand 5	A	308	313	anti-parallel
Strand 6	A	316	320	anti-parallel
Strand 7	A	341	343	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	332	336	anti-parallel
Strand 3	A	29	40	parallel
Strand 4	A	20	24	anti-parallel
Strand 5	A	433	437	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	44	51	parallel
Strand 4	A	266	273	anti-parallel
Strand 5	A	256	263	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	298	304	anti-parallel
Strand 3	A	362	366	anti-parallel
Strand 4	A	455	459	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	379	384	anti-parallel
Strand 3	A	406	411	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	391	393	anti-parallel
Strand 3	A	417	419	anti-parallel
Strand 4	A	424	426	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	320	first strand
Strand 2	B	308	313	anti-parallel
Strand 3	B	278	288	anti-parallel
Strand 4	B	29	40	anti-parallel
Strand 5	B	332	336	parallel
Strand 6	B	327	329	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	320	first strand
Strand 2	B	308	313	anti-parallel
Strand 3	B	278	288	anti-parallel
Strand 4	B	29	40	anti-parallel
Strand 5	B	20	24	anti-parallel
Strand 6	B	433	437	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	44	51	parallel
Strand 4	B	266	273	anti-parallel
Strand 5	B	256	263	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	298	304	anti-parallel
Strand 3	B	362	366	anti-parallel
Strand 4	B	455	459	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	376	first strand
Strand 2	B	379	383	anti-parallel
Strand 3	B	408	411	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	402	first strand
Strand 2	B	390	393	anti-parallel
Strand 3	B	417	420	anti-parallel
Strand 4	B	423	426	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	329	first strand
Strand 2	C	332	336	anti-parallel
Strand 3	C	29	40	parallel
Strand 4	C	278	288	anti-parallel
Strand 5	C	308	313	anti-parallel
Strand 6	C	316	320	anti-parallel
Strand 7	C	341	343	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	329	first strand
Strand 2	C	332	336	anti-parallel
Strand 3	C	29	40	parallel
Strand 4	C	20	24	anti-parallel
Strand 5	C	433	437	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	156	162	anti-parallel
Strand 3	C	44	51	parallel
Strand 4	C	266	273	anti-parallel
Strand 5	C	256	263	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	295	first strand
Strand 2	C	298	304	anti-parallel
Strand 3	C	362	366	anti-parallel
Strand 4	C	458	459	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	379	383	anti-parallel
Strand 3	C	408	411	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	390	393	anti-parallel
Strand 3	C	417	420	anti-parallel
Strand 4	C	423	426	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	84	91	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	45	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	84	91	anti-parallel
Strand 4	G	96	98	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	18	23	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	68	72	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	95	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	59	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	62	67	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	14	first strand
Strand 2	J	96	106	parallel
Strand 3	J	85	91	anti-parallel
Strand 4	J	34	38	anti-parallel
Strand 5	J	45	49	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UR4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UR4