Analysis of interatomic Contacts of Structural Units in PDB entry:
7URF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7URF entry

There are 4 chains in PDB entry 7URF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 491
B
 CYS 24PHE 30
O
 ILE 21SER 137
P
 VAL 21LYS 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7URF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 32Right-handed alpha
Helix 2
AA2
A
32 40Right-handed alpha
Helix 3
AA3
A
57 68Right-handed alpha
Helix 4
AA4
A
70 89Right-handed alpha
Helix 5
AA5
A
92 129Right-handed alpha
Helix 6
AA6
A
132 149Right-handed alpha
Helix 7
AA7
A
149 160Right-handed alpha
Helix 8
AA8
A
164 190Right-handed alpha
Helix 9
AA9
A
192 196Right-handed 310
Helix 10
AB1
A
200 209Right-handed alpha
Helix 11
AB2
A
210 214Right-handed 310
Helix 12
AB3
A
221 229Right-handed alpha
Helix 13
AB4
A
236 265Right-handed alpha
Helix 14
AB5
A
266 273Right-handed alpha
Helix 15
AB6
A
273 278Right-handed alpha
Helix 16
AB7
A
281 315Right-handed alpha
Helix 17
AB8
A
324 328Right-handed 310
Helix 18
AB9
A
330 338Right-handed alpha
Helix 19
AC1
A
339 350Right-handed alpha
Helix 20
AC2
A
350 355Right-handed alpha
Helix 21
AC3
A
359 380Right-handed alpha
Helix 22
AC4
A
382 407Right-handed alpha
Helix 23
AC5
A
408 419Right-handed alpha
Helix 24
AC6
A
420 448Right-handed alpha
Helix 25
AC7
A
449 462Right-handed alpha
Helix 26
AC8
A
464 488Right-handed alpha
Helix 27
AC9
O
47 51Right-handed 310
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There are 6 sheets in PDB entry 7URF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
22 25first strand
Strand 2
O
36 44anti-parallel
Strand 3
O
99 105anti-parallel
Strand 4
O
88 91anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
29 30first strand
Strand 2
O
132 135parallel
Strand 3
O
112 118anti-parallel
Strand 4
O
53 58anti-parallel
Strand 5
O
64 70anti-parallel
Strand 6
O
77 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
29 30first strand
Strand 2
O
132 135parallel
Strand 3
O
112 118anti-parallel
Strand 4
O
125 128anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
24 26first strand
Strand 2
P
38 43anti-parallel
Strand 3
P
94 99anti-parallel
Strand 4
P
88 90anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
29 32first strand
Strand 2
P
126 130parallel
Strand 3
P
109 114anti-parallel
Strand 4
P
57 62anti-parallel
Strand 5
P
69 72anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
29 32first strand
Strand 2
P
126 130parallel
Strand 3
P
109 114anti-parallel
Strand 4
P
121 122anti-parallel
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