Analysis of interatomic Contacts of Structural Units in PDB entry:
7USD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7USD entry

There are 6 chains in PDB entry 7USD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	GLN 1248
B	GLN 7	LYS 1121
C	ASN 24	SER 544
D	ARG 10	GLY 71
E	MET 1	VAL 155
F	GLN 2	CYS 178

There are152 helices in PDB entry 7USD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	19	Right-handed alpha
Helix 2	AA2	A	58	85	Right-handed alpha
Helix 3	AA3	A	103	144	Right-handed alpha
Helix 4	AA4	A	145	150	Right-handed alpha
Helix 5	AA5	A	154	178	Right-handed alpha
Helix 6	AA6	A	179	196	Right-handed alpha
Helix 7	AA7	A	200	216	Right-handed alpha
Helix 8	AA8	A	218	230	Right-handed alpha
Helix 9	AA9	A	233	251	Right-handed alpha
Helix 10	AB1	A	256	275	Right-handed alpha
Helix 11	AB2	A	280	287	Right-handed alpha
Helix 12	AB3	A	291	302	Right-handed alpha
Helix 13	AB4	A	316	321	Right-handed alpha
Helix 14	AB5	A	325	332	Right-handed 310
Helix 15	AB6	A	348	365	Right-handed alpha
Helix 16	AB7	A	383	418	Right-handed alpha
Helix 17	AB8	A	433	440	Right-handed alpha
Helix 18	AB9	A	441	443	Right-handed 310
Helix 19	AC1	A	444	468	Right-handed alpha
Helix 20	AC2	A	468	491	Right-handed alpha
Helix 21	AC3	A	492	502	Right-handed alpha
Helix 22	AC4	A	504	518	Right-handed alpha
Helix 23	AC5	A	530	535	Right-handed alpha
Helix 24	AC6	A	555	570	Right-handed alpha
Helix 25	AC7	A	579	584	Right-handed 310
Helix 26	AC8	A	585	599	Right-handed alpha
Helix 27	AC9	A	601	607	Right-handed alpha
Helix 28	AD1	A	607	616	Right-handed alpha
Helix 29	AD2	A	617	622	Right-handed 310
Helix 30	AD3	A	624	630	Right-handed alpha
Helix 31	AD4	A	639	642	Right-handed 310
Helix 32	AD5	A	643	656	Right-handed alpha
Helix 33	AD6	A	658	664	Right-handed 310
Helix 34	AD7	A	665	668	Right-handed 310
Helix 35	AD8	A	669	681	Right-handed alpha
Helix 36	AD9	A	684	723	Right-handed alpha
Helix 37	AE1	A	724	735	Right-handed alpha
Helix 38	AE2	A	745	751	Right-handed alpha
Helix 39	AE3	A	763	789	Right-handed alpha
Helix 40	AE4	A	791	793	Right-handed 310
Helix 41	AE5	A	794	813	Right-handed alpha
Helix 42	AE6	A	820	829	Right-handed alpha
Helix 43	AE7	A	837	850	Right-handed alpha
Helix 44	AE8	A	891	903	Right-handed alpha
Helix 45	AE9	A	904	906	Right-handed 310
Helix 46	AF1	A	910	922	Right-handed alpha
Helix 47	AF2	A	923	942	Right-handed alpha
Helix 48	AF3	A	943	956	Right-handed alpha
Helix 49	AF4	A	968	980	Right-handed alpha
Helix 50	AF5	A	980	986	Right-handed alpha
Helix 51	AF6	A	992	1026	Right-handed alpha
Helix 52	AF7	A	1027	1030	Right-handed 310
Helix 53	AF8	A	1042	1054	Right-handed alpha
Helix 54	AF9	A	1055	1058	Right-handed 310
Helix 55	AG1	A	1059	1066	Right-handed alpha
Helix 56	AG2	A	1068	1084	Right-handed alpha
Helix 57	AG3	A	1085	1088	Right-handed 310
Helix 58	AG4	A	1092	1104	Right-handed alpha
Helix 59	AG5	A	1106	1110	Right-handed 310
Helix 60	AG6	A	1126	1139	Right-handed alpha
Helix 61	AG7	A	1148	1153	Right-handed alpha
Helix 62	AG8	A	1155	1168	Right-handed alpha
Helix 63	AG9	A	1170	1177	Right-handed alpha
Helix 64	AH1	A	1178	1191	Right-handed alpha
Helix 65	AH2	A	1200	1227	Right-handed alpha
Helix 66	AH3	B	8	12	Right-handed alpha
Helix 67	AH4	B	12	40	Right-handed alpha
Helix 68	AH5	B	45	49	Right-handed 310
Helix 69	AH6	B	53	63	Right-handed alpha
Helix 70	AH7	B	76	81	Right-handed alpha
Helix 71	AH8	B	82	90	Right-handed alpha
Helix 72	AH9	B	90	118	Right-handed alpha
Helix 73	AI1	B	126	150	Right-handed alpha
Helix 74	AI2	B	152	169	Right-handed alpha
Helix 75	AI3	B	174	185	Right-handed alpha
Helix 76	AI4	B	187	196	Right-handed alpha
Helix 77	AI5	B	199	209	Right-handed alpha
Helix 78	AI6	B	210	212	Right-handed 310
Helix 79	AI7	B	213	218	Right-handed alpha
Helix 80	AI8	B	220	228	Right-handed alpha
Helix 81	AI9	B	231	239	Right-handed 310
Helix 82	AJ1	B	247	252	Right-handed alpha
Helix 83	AJ2	B	254	269	Right-handed alpha
Helix 84	AJ3	B	269	276	Right-handed alpha
Helix 85	AJ4	B	277	289	Right-handed alpha
Helix 86	AJ5	B	303	313	Right-handed alpha
Helix 87	AJ6	B	317	360	Right-handed alpha
Helix 88	AJ7	B	361	365	Right-handed 310
Helix 89	AJ8	B	367	391	Right-handed alpha
Helix 90	AJ9	B	404	422	Right-handed alpha
Helix 91	AK1	B	422	437	Right-handed alpha
Helix 92	AK2	B	437	447	Right-handed alpha
Helix 93	AK3	B	453	470	Right-handed alpha
Helix 94	AK4	B	472	477	Right-handed alpha
Helix 95	AK5	B	483	498	Right-handed alpha
Helix 96	AK6	B	505	508	Right-handed 310
Helix 97	AK7	B	509	528	Right-handed alpha
Helix 98	AK8	B	528	537	Right-handed alpha
Helix 99	AK9	B	539	544	Right-handed 310
Helix 100	AL1	B	545	558	Right-handed alpha
Helix 101	AL2	B	561	566	Right-handed 310
Helix 102	AL3	B	567	574	Right-handed alpha
Helix 103	AL4	B	575	579	Right-handed 310
Helix 104	AL5	B	586	627	Right-handed alpha
Helix 105	AL6	B	628	632	Right-handed 310
Helix 106	AL7	B	633	642	Right-handed alpha
Helix 107	AL8	B	661	665	Right-handed 310
Helix 108	AL9	B	673	690	Right-handed alpha
Helix 109	AM1	B	703	723	Right-handed alpha
Helix 110	AM2	B	735	753	Right-handed alpha
Helix 111	AM3	B	754	756	Right-handed 310
Helix 112	AM4	B	761	774	Right-handed alpha
Helix 113	AM5	B	783	796	Right-handed alpha
Helix 114	AM6	B	796	802	Right-handed alpha
Helix 115	AM7	B	826	830	Right-handed 310
Helix 116	AM8	B	832	844	Right-handed alpha
Helix 117	AM9	B	844	873	Right-handed alpha
Helix 118	AN1	B	873	883	Right-handed alpha
Helix 119	AN2	B	886	897	Right-handed alpha
Helix 120	AN3	B	899	932	Right-handed alpha
Helix 121	AN4	B	932	945	Right-handed alpha
Helix 122	AN5	B	951	965	Right-handed alpha
Helix 123	AN6	B	972	981	Right-handed alpha
Helix 124	AN7	B	988	1007	Right-handed alpha
Helix 125	AN8	B	1008	1017	Right-handed 310
Helix 126	AN9	B	1028	1030	Right-handed 310
Helix 127	AO1	B	1031	1047	Right-handed alpha
Helix 128	AO2	B	1050	1072	Right-handed alpha
Helix 129	AO3	B	1080	1095	Right-handed alpha
Helix 130	AO4	B	1099	1107	Right-handed alpha
Helix 131	AO5	B	1108	1119	Right-handed alpha
Helix 132	AO6	C	25	81	Right-handed alpha
Helix 133	AO7	C	93	98	Right-handed alpha
Helix 134	AO8	C	113	117	Right-handed 310
Helix 135	AO9	C	118	127	Right-handed alpha
Helix 136	AP1	C	133	141	Right-handed 310
Helix 137	AP2	C	147	151	Right-handed 310
Helix 138	AP3	C	155	177	Right-handed alpha
Helix 139	AP4	C	500	515	Right-handed alpha
Helix 140	AP5	C	530	542	Right-handed alpha
Helix 141	AP6	D	11	68	Right-handed alpha
Helix 142	AP7	E	2	10	Right-handed alpha
Helix 143	AP8	E	11	39	Right-handed alpha
Helix 144	AP9	E	42	110	Right-handed alpha
Helix 145	AQ1	E	111	113	Right-handed 310
Helix 146	AQ2	F	15	26	Right-handed alpha
Helix 147	AQ3	F	61	65	Right-handed 310
Helix 148	AQ4	F	68	72	Right-handed 310
Helix 149	AQ5	F	86	105	Right-handed alpha
Helix 150	AQ6	F	122	132	Right-handed alpha
Helix 151	AQ7	F	138	150	Right-handed alpha
Helix 152	AQ8	F	165	178	Right-handed alpha

There are 8 sheets in PDB entry 7USD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	311	314	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	757	first strand
Strand 2	A	760	762	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	855	858	first strand
Strand 2	A	863	866	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1090	1091	first strand
Strand 2	E	114	115	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	301	302	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	697	first strand
Strand 2	B	700	702	anti-parallel
Strand 3	E	124	125	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	808	first strand
Strand 2	B	813	816	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	46	first strand
Strand 2	F	49	58	anti-parallel
Strand 3	F	3	10	parallel
Strand 4	F	77	83	parallel
Strand 5	F	110	115	parallel
Strand 6	F	153	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7USD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7USD