Analysis of interatomic Contacts of Structural Units in PDB entry:
7UVA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UVA entry

There are 6 chains in PDB entry 7UVA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 36	GLU 364
B	GLN 450	PRO 517
C	ALA 29	HIS 39
D	ARG 36	GLU 364
E	GLN 450	PRO 517
F	THR 32	LYS 37

There are 44 helices in PDB entry 7UVA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	46	Right-handed alpha
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	A	63	71	Right-handed alpha
Helix 4	AA4	A	94	103	Right-handed alpha
Helix 5	AA5	A	123	132	Right-handed alpha
Helix 6	AA6	A	133	137	Right-handed 310
Helix 7	AA7	A	153	157	Right-handed 310
Helix 8	AA8	A	160	167	Right-handed alpha
Helix 9	AA9	A	167	173	Right-handed alpha
Helix 10	AB1	A	174	179	Right-handed alpha
Helix 11	AB2	A	187	191	Right-handed 310
Helix 12	AB3	A	214	218	Right-handed 310
Helix 13	AB4	A	237	251	Right-handed alpha
Helix 14	AB5	A	257	262	Right-handed alpha
Helix 15	AB6	A	304	318	Right-handed alpha
Helix 16	AB7	A	321	325	Right-handed 310
Helix 17	AB8	A	328	346	Right-handed alpha
Helix 18	AB9	A	351	363	Right-handed alpha
Helix 19	AC1	B	454	470	Right-handed alpha
Helix 20	AC2	B	472	477	Right-handed alpha
Helix 21	AC3	B	484	500	Right-handed alpha
Helix 22	AC4	B	503	508	Right-handed alpha
Helix 23	AC5	D	39	46	Right-handed alpha
Helix 24	AC6	D	58	62	Right-handed 310
Helix 25	AC7	D	63	71	Right-handed alpha
Helix 26	AC8	D	94	103	Right-handed alpha
Helix 27	AC9	D	123	132	Right-handed alpha
Helix 28	AD1	D	133	137	Right-handed 310
Helix 29	AD2	D	151	157	Right-handed 310
Helix 30	AD3	D	160	167	Right-handed alpha
Helix 31	AD4	D	167	173	Right-handed alpha
Helix 32	AD5	D	174	181	Right-handed alpha
Helix 33	AD6	D	187	191	Right-handed 310
Helix 34	AD7	D	215	218	Right-handed 310
Helix 35	AD8	D	237	251	Right-handed alpha
Helix 36	AD9	D	257	262	Right-handed alpha
Helix 37	AE1	D	304	318	Right-handed alpha
Helix 38	AE2	D	321	325	Right-handed 310
Helix 39	AE3	D	328	346	Right-handed alpha
Helix 40	AE4	D	351	364	Right-handed alpha
Helix 41	AE5	E	454	471	Right-handed alpha
Helix 42	AE6	E	472	476	Right-handed 310
Helix 43	AE7	E	484	500	Right-handed alpha
Helix 44	AE8	E	503	508	Right-handed alpha

There are 4 sheets in PDB entry 7UVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	76	78	parallel
Strand 3	A	275	278	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	292	299	anti-parallel
Strand 6	A	199	203	anti-parallel
Strand 7	A	141	147	anti-parallel
Strand 8	A	107	112	anti-parallel
Strand 9	A	117	122	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	212	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	228	234	anti-parallel
Strand 4	A	266	271	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	76	78	parallel
Strand 3	D	275	278	anti-parallel
Strand 4	D	219	226	anti-parallel
Strand 5	D	292	299	anti-parallel
Strand 6	D	199	203	anti-parallel
Strand 7	D	141	147	anti-parallel
Strand 8	D	107	112	anti-parallel
Strand 9	D	117	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	213	first strand
Strand 2	D	283	287	anti-parallel
Strand 3	D	228	234	anti-parallel
Strand 4	D	266	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UVA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UVA