Analysis of interatomic Contacts of Structural Units in PDB entry:
7UX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UX8 entry

There are 2 chains in PDB entry 7UX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6GLN 383
B
 ASN 6ARG 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 7UX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
19 36Right-handed alpha
Helix 3
AA3
A
38 51Right-handed alpha
Helix 4
AA4
A
51 59Right-handed alpha
Helix 5
AA5
A
62 70Right-handed alpha
Helix 6
AA6
A
73 87Right-handed alpha
Helix 7
AA7
A
104 112Right-handed alpha
Helix 8
AA8
A
119 129Right-handed alpha
Helix 9
AA9
A
129 136Right-handed alpha
Helix 10
AB1
A
136 144Right-handed alpha
Helix 11
AB2
A
158 169Right-handed alpha
Helix 12
AB3
A
172 187Right-handed alpha
Helix 13
AB4
A
205 215Right-handed alpha
Helix 14
AB5
A
225 239Right-handed alpha
Helix 15
AB6
A
241 243Right-handed 310
Helix 16
AB7
A
251 255Right-handed 310
Helix 17
AB8
A
269 273Right-handed 310
Helix 18
AB9
A
274 288Right-handed alpha
Helix 19
AC1
A
310 326Right-handed alpha
Helix 20
AC2
A
333 344Right-handed alpha
Helix 21
AC3
A
374 383Right-handed alpha
Helix 22
AC4
B
11 15Right-handed 310
Helix 23
AC5
B
19 36Right-handed alpha
Helix 24
AC6
B
38 51Right-handed alpha
Helix 25
AC7
B
51 59Right-handed alpha
Helix 26
AC8
B
62 71Right-handed alpha
Helix 27
AC9
B
73 87Right-handed alpha
Helix 28
AD1
B
104 112Right-handed alpha
Helix 29
AD2
B
119 129Right-handed alpha
Helix 30
AD3
B
129 135Right-handed alpha
Helix 31
AD4
B
136 144Right-handed alpha
Helix 32
AD5
B
158 166Right-handed alpha
Helix 33
AD6
B
167 171Right-handed 310
Helix 34
AD7
B
172 186Right-handed alpha
Helix 35
AD8
B
205 215Right-handed alpha
Helix 36
AD9
B
225 239Right-handed alpha
Helix 37
AE1
B
241 243Right-handed 310
Helix 38
AE2
B
251 255Right-handed 310
Helix 39
AE3
B
269 273Right-handed 310
Helix 40
AE4
B
274 288Right-handed alpha
Helix 41
AE5
B
310 326Right-handed alpha
Helix 42
AE6
B
333 344Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7UX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 95first strand
Strand 2
A
98 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
219 224parallel
Strand 3
A
196 200parallel
Strand 4
A
261 267parallel
Strand 5
A
289 299parallel
Strand 6
A
358 364anti-parallel
Strand 7
A
346 353anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 95first strand
Strand 2
B
98 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
219 224parallel
Strand 3
B
196 200parallel
Strand 4
B
261 267parallel
Strand 5
B
289 299parallel
Strand 6
B
358 364anti-parallel
Strand 7
B
346 353anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il