Analysis of interatomic Contacts of Structural Units in PDB entry:
7UY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7UY4 entry

There are 2 chains in PDB entry 7UY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLY 258
B
 VAL 1VAL 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7UY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 21Right-handed alpha
Helix 2
AA2
A
32 34Right-handed 310
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
89 93Right-handed alpha
Helix 5
AA5
A
106 108Right-handed 310
Helix 6
AA6
A
109 115Right-handed alpha
Helix 7
AA7
A
126 137Right-handed alpha
Helix 8
AA8
A
145 150Right-handed alpha
Helix 9
AA9
A
154 166Right-handed alpha
Helix 10
AB1
A
167 169Right-handed 310
Helix 11
AB2
A
171 176Right-handed 310
Helix 12
AB3
A
178 196Right-handed alpha
Helix 13
AB4
A
200 211Right-handed alpha
Helix 14
AB5
A
216 228Right-handed alpha
Helix 15
AB6
A
238 256Right-handed alpha
Helix 16
AB7
B
5 21Right-handed alpha
Helix 17
AB8
B
31 34Right-handed 310
Helix 18
AB9
B
55 70Right-handed alpha
Helix 19
AC1
B
89 93Right-handed alpha
Helix 20
AC2
B
106 108Right-handed 310
Helix 21
AC3
B
109 115Right-handed alpha
Helix 22
AC4
B
126 137Right-handed alpha
Helix 23
AC5
B
145 150Right-handed alpha
Helix 24
AC6
B
154 167Right-handed alpha
Helix 25
AC7
B
171 176Right-handed 310
Helix 26
AC8
B
178 196Right-handed alpha
Helix 27
AC9
B
200 212Right-handed alpha
Helix 28
AD1
B
213 215Right-handed 310
Helix 29
AD2
B
216 227Right-handed alpha
Helix 30
AD3
B
238 257Right-handed alpha
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There are 4 sheets in PDB entry 7UY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
44 50parallel
Strand 4
A
24 30anti-parallel
Strand 5
A
138 142anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
122 124anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
82 88anti-parallel
Strand 3
B
44 50parallel
Strand 4
B
24 30anti-parallel
Strand 5
B
139 142anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
122 124anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il