Analysis of interatomic Contacts of Structural Units in PDB entry:
7UY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UY5 entry

There are 10 chains in PDB entry 7UY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 115	LYS 532
A	LYS 11	LYS 1110
D	GLN 511	ASN 697
E	PRO 28	GLU 175
F	GLN 5	GLN 121
G	MET 1	GLN 208
B	C 4	U 159
C	G 17	G 30
I	LEU 7	ASN 622
K	PHE 8	ASP 9

There are 96 helices in PDB entry 7UY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	115	130	Right-handed alpha
Helix 2	AA2	H	131	139	Right-handed alpha
Helix 3	AA3	H	139	148	Right-handed alpha
Helix 4	AA4	H	155	160	Right-handed alpha
Helix 5	AA5	H	162	167	Right-handed alpha
Helix 6	AA6	H	203	216	Right-handed alpha
Helix 7	AA7	H	391	400	Right-handed alpha
Helix 8	AA8	H	401	403	Right-handed 310
Helix 9	AA9	H	468	480	Right-handed alpha
Helix 10	AB1	H	503	530	Right-handed alpha
Helix 11	AB2	A	19	26	Right-handed alpha
Helix 12	AB3	A	36	43	Right-handed alpha
Helix 13	AB4	A	53	63	Right-handed alpha
Helix 14	AB5	A	88	101	Right-handed alpha
Helix 15	AB6	A	106	110	Right-handed 310
Helix 16	AB7	A	127	132	Right-handed alpha
Helix 17	AB8	A	133	144	Right-handed alpha
Helix 18	AB9	A	144	155	Right-handed alpha
Helix 19	AC1	A	173	179	Right-handed 310
Helix 20	AC2	A	225	230	Right-handed 310
Helix 21	AC3	A	245	251	Right-handed alpha
Helix 22	AC4	A	282	289	Right-handed alpha
Helix 23	AC5	A	289	294	Right-handed alpha
Helix 24	AC6	A	300	319	Right-handed alpha
Helix 25	AC7	A	322	331	Right-handed alpha
Helix 26	AC8	A	336	350	Right-handed alpha
Helix 27	AC9	A	355	368	Right-handed alpha
Helix 28	AD1	A	372	386	Right-handed alpha
Helix 29	AD2	A	394	411	Right-handed alpha
Helix 30	AD3	A	418	424	Right-handed alpha
Helix 31	AD4	A	444	475	Right-handed alpha
Helix 32	AD5	A	493	511	Right-handed alpha
Helix 33	AD6	A	521	528	Right-handed alpha
Helix 34	AD7	A	560	565	Right-handed alpha
Helix 35	AD8	A	565	582	Right-handed alpha
Helix 36	AD9	A	589	608	Right-handed alpha
Helix 37	AE1	A	622	626	Right-handed 310
Helix 38	AE2	A	627	637	Right-handed alpha
Helix 39	AE3	A	691	694	Right-handed 310
Helix 40	AE4	A	713	718	Right-handed alpha
Helix 41	AE5	A	742	755	Right-handed alpha
Helix 42	AE6	A	777	793	Right-handed alpha
Helix 43	AE7	A	794	804	Right-handed alpha
Helix 44	AE8	A	823	842	Right-handed alpha
Helix 45	AE9	A	845	847	Right-handed 310
Helix 46	AF1	A	895	901	Right-handed alpha
Helix 47	AF2	A	911	925	Right-handed alpha
Helix 48	AF3	A	938	966	Right-handed alpha
Helix 49	AF4	A	972	980	Right-handed alpha
Helix 50	AF5	A	983	1009	Right-handed alpha
Helix 51	AF6	A	1014	1038	Right-handed alpha
Helix 52	AF7	A	1041	1044	Right-handed 310
Helix 53	AF8	A	1045	1074	Right-handed alpha
Helix 54	AF9	A	1081	1095	Right-handed alpha
Helix 55	AG1	A	1102	1109	Right-handed alpha
Helix 56	AG2	D	516	526	Right-handed alpha
Helix 57	AG3	D	603	615	Right-handed alpha
Helix 58	AG4	D	622	634	Right-handed alpha
Helix 59	AG5	D	636	645	Right-handed alpha
Helix 60	AG6	D	680	697	Right-handed alpha
Helix 61	AG7	E	35	49	Right-handed alpha
Helix 62	AG8	E	110	124	Right-handed alpha
Helix 63	AG9	E	153	175	Right-handed alpha
Helix 64	AH1	F	16	22	Right-handed alpha
Helix 65	AH2	F	98	111	Right-handed alpha
Helix 66	AH3	F	114	119	Right-handed alpha
Helix 67	AH4	G	2	7	Right-handed alpha
Helix 68	AH5	G	9	29	Right-handed alpha
Helix 69	AH6	G	33	41	Right-handed alpha
Helix 70	AH7	G	87	94	Right-handed alpha
Helix 71	AH8	G	151	156	Right-handed alpha
Helix 72	AH9	G	158	161	Right-handed 310
Helix 73	AI1	G	162	184	Right-handed alpha
Helix 74	AI2	G	186	197	Right-handed alpha
Helix 75	AI3	I	8	32	Right-handed alpha
Helix 76	AI4	I	101	107	Right-handed alpha
Helix 77	AI5	I	167	179	Right-handed alpha
Helix 78	AI6	I	190	197	Right-handed alpha
Helix 79	AI7	I	203	208	Right-handed alpha
Helix 80	AI8	I	231	236	Right-handed alpha
Helix 81	AI9	I	275	286	Right-handed alpha
Helix 82	AJ1	I	303	305	Right-handed 310
Helix 83	AJ2	I	322	328	Right-handed alpha
Helix 84	AJ3	I	342	351	Right-handed alpha
Helix 85	AJ4	I	352	359	Right-handed alpha
Helix 86	AJ5	I	365	369	Right-handed 310
Helix 87	AJ6	I	446	453	Right-handed alpha
Helix 88	AJ7	I	456	470	Right-handed alpha
Helix 89	AJ8	I	485	498	Right-handed alpha
Helix 90	AJ9	I	601	622	Right-handed alpha
Helix 91	AK1	K	15	23	Right-handed alpha
Helix 92	AK2	K	48	61	Right-handed alpha
Helix 93	AK3	K	64	87	Right-handed alpha
Helix 94	AK4	K	151	164	Right-handed alpha
Helix 95	AK5	J	66	70	Right-handed 310
Helix 96	AK6	J	108	136	Right-handed alpha

There are 26 sheets in PDB entry 7UY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	229	231	anti-parallel
Strand 3	H	220	221	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	407	408	first strand
Strand 2	H	461	465	anti-parallel
Strand 3	H	380	384	anti-parallel
Strand 4	H	494	498	anti-parallel
Strand 5	H	488	491	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	165	168	anti-parallel
Strand 5	A	729	733	parallel
Strand 6	A	644	655	anti-parallel
Strand 7	A	696	705	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	165	168	anti-parallel
Strand 5	A	729	733	parallel
Strand 6	A	644	655	anti-parallel
Strand 7	A	738	741	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	118	121	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	479	first strand
Strand 2	A	489	492	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	763	767	anti-parallel
Strand 3	A	757	760	anti-parallel
Strand 4	A	531	538	parallel
Strand 5	A	541	547	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	808	813	first strand
Strand 2	A	816	821	anti-parallel
Strand 3	A	613	616	anti-parallel
Strand 4	A	849	852	anti-parallel
Strand 5	A	867	870	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	876	first strand
Strand 2	A	879	881	anti-parallel
Strand 3	A	888	890	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	532	537	first strand
Strand 2	D	649	662	anti-parallel
Strand 3	D	665	677	anti-parallel
Strand 4	D	597	602	parallel
Strand 5	D	587	592	anti-parallel
Strand 6	D	540	545	anti-parallel
Strand 7	D	649	662	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	551	553	first strand
Strand 2	D	583	585	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	562	563	first strand
Strand 2	D	571	572	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	66	75	parallel
Strand 3	E	84	91	anti-parallel
Strand 4	E	94	96	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	66	75	parallel
Strand 3	E	129	136	anti-parallel
Strand 4	E	142	149	anti-parallel
Strand 5	E	99	101	parallel
Strand 6	E	84	91	anti-parallel
Strand 7	E	94	96	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	91	first strand
Strand 2	F	70	79	anti-parallel
Strand 3	F	82	83	anti-parallel
Strand 4	F	53	56	parallel
Strand 5	F	41	44	anti-parallel
Strand 6	F	25	32	anti-parallel
Strand 7	F	70	79	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	103	117	anti-parallel
Strand 3	G	58	66	anti-parallel
Strand 4	G	71	76	anti-parallel
Strand 5	G	79	85	anti-parallel
Strand 6	G	144	147	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	103	117	anti-parallel
Strand 3	G	120	135	anti-parallel
Strand 4	G	79	85	parallel
Strand 5	G	144	147	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	203	205	first strand
Strand 2	I	161	163	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	57	first strand
Strand 2	I	114	120	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	68	first strand
Strand 2	I	72	83	anti-parallel
Strand 3	I	88	93	anti-parallel
Strand 4	I	152	153	parallel
Strand 5	I	122	123	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	188	189	first strand
Strand 2	I	374	375	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	335	337	first strand
Strand 2	I	291	301	anti-parallel
Strand 3	I	307	313	anti-parallel
Strand 4	I	264	272	parallel
Strand 5	I	248	256	anti-parallel
Strand 6	I	213	226	anti-parallel
Strand 7	I	291	301	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	473	476	first strand
Strand 2	I	380	397	anti-parallel
Strand 3	I	501	509	anti-parallel
Strand 4	I	588	594	anti-parallel
Strand 5	I	439	444	parallel
Strand 6	I	421	432	anti-parallel
Strand 7	I	380	397	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	569	571	first strand
Strand 2	I	584	586	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	112	113	first strand
Strand 2	K	137	145	parallel
Strand 3	K	121	131	anti-parallel
Strand 4	K	35	43	anti-parallel
Strand 5	K	94	99	anti-parallel
Strand 6	K	102	107	anti-parallel
Strand 7	K	137	145	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	7	first strand
Strand 2	J	21	32	parallel
Strand 3	J	78	89	anti-parallel
Strand 4	J	94	105	anti-parallel
Strand 5	J	58	62	parallel
Strand 6	J	49	53	anti-parallel
Strand 7	J	21	32	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UY5