Analysis of interatomic Contacts of Structural Units in PDB entry:
7UY6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UY6 entry

There are 8 chains in PDB entry 7UY6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 115	LYS 532
A	LYS 11	LYS 1110
D	GLN 511	ASN 697
E	PRO 28	GLU 175
F	GLN 5	GLN 121
G	MET 1	ILE 184
B	C 4	U 159
C	G 47	G 60

There are 78 helices in PDB entry 7UY6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	115	130	Right-handed alpha
Helix 2	AA2	H	131	139	Right-handed alpha
Helix 3	AA3	H	141	148	Right-handed alpha
Helix 4	AA4	H	157	161	Right-handed 310
Helix 5	AA5	H	162	167	Right-handed alpha
Helix 6	AA6	H	203	216	Right-handed alpha
Helix 7	AA7	H	391	400	Right-handed alpha
Helix 8	AA8	H	401	403	Right-handed 310
Helix 9	AA9	H	469	480	Right-handed alpha
Helix 10	AB1	H	503	531	Right-handed alpha
Helix 11	AB2	A	19	25	Right-handed alpha
Helix 12	AB3	A	36	43	Right-handed alpha
Helix 13	AB4	A	53	63	Right-handed alpha
Helix 14	AB5	A	88	101	Right-handed alpha
Helix 15	AB6	A	106	110	Right-handed 310
Helix 16	AB7	A	127	132	Right-handed alpha
Helix 17	AB8	A	133	144	Right-handed alpha
Helix 18	AB9	A	144	155	Right-handed alpha
Helix 19	AC1	A	173	178	Right-handed 310
Helix 20	AC2	A	225	230	Right-handed 310
Helix 21	AC3	A	245	250	Right-handed alpha
Helix 22	AC4	A	282	289	Right-handed alpha
Helix 23	AC5	A	289	294	Right-handed alpha
Helix 24	AC6	A	300	319	Right-handed alpha
Helix 25	AC7	A	322	330	Right-handed alpha
Helix 26	AC8	A	336	350	Right-handed alpha
Helix 27	AC9	A	355	368	Right-handed alpha
Helix 28	AD1	A	372	386	Right-handed alpha
Helix 29	AD2	A	394	410	Right-handed alpha
Helix 30	AD3	A	419	424	Right-handed alpha
Helix 31	AD4	A	425	426	Right-handed 310
Helix 32	AD5	A	427	431	Right-handed 310
Helix 33	AD6	A	444	467	Right-handed alpha
Helix 34	AD7	A	467	475	Right-handed alpha
Helix 35	AD8	A	493	511	Right-handed alpha
Helix 36	AD9	A	521	528	Right-handed alpha
Helix 37	AE1	A	553	557	Right-handed 310
Helix 38	AE2	A	560	565	Right-handed alpha
Helix 39	AE3	A	565	579	Right-handed alpha
Helix 40	AE4	A	589	608	Right-handed alpha
Helix 41	AE5	A	622	626	Right-handed 310
Helix 42	AE6	A	627	638	Right-handed alpha
Helix 43	AE7	A	691	694	Right-handed 310
Helix 44	AE8	A	713	718	Right-handed alpha
Helix 45	AE9	A	742	755	Right-handed alpha
Helix 46	AF1	A	777	793	Right-handed alpha
Helix 47	AF2	A	794	804	Right-handed alpha
Helix 48	AF3	A	823	842	Right-handed alpha
Helix 49	AF4	A	845	847	Right-handed 310
Helix 50	AF5	A	895	901	Right-handed alpha
Helix 51	AF6	A	908	910	Right-handed 310
Helix 52	AF7	A	911	926	Right-handed alpha
Helix 53	AF8	A	938	965	Right-handed alpha
Helix 54	AF9	A	966	967	Right-handed 310
Helix 55	AG1	A	968	971	Right-handed 310
Helix 56	AG2	A	972	980	Right-handed alpha
Helix 57	AG3	A	983	1009	Right-handed alpha
Helix 58	AG4	A	1014	1038	Right-handed alpha
Helix 59	AG5	A	1045	1075	Right-handed alpha
Helix 60	AG6	A	1081	1094	Right-handed alpha
Helix 61	AG7	A	1103	1108	Right-handed alpha
Helix 62	AG8	D	516	527	Right-handed alpha
Helix 63	AG9	D	603	615	Right-handed alpha
Helix 64	AH1	D	621	634	Right-handed alpha
Helix 65	AH2	D	636	645	Right-handed alpha
Helix 66	AH3	D	679	697	Right-handed alpha
Helix 67	AH4	E	35	49	Right-handed alpha
Helix 68	AH5	E	110	123	Right-handed alpha
Helix 69	AH6	E	153	175	Right-handed alpha
Helix 70	AH7	F	14	22	Right-handed alpha
Helix 71	AH8	F	99	110	Right-handed alpha
Helix 72	AH9	F	114	119	Right-handed alpha
Helix 73	AI1	G	2	7	Right-handed alpha
Helix 74	AI2	G	9	29	Right-handed alpha
Helix 75	AI3	G	33	41	Right-handed alpha
Helix 76	AI4	G	87	94	Right-handed alpha
Helix 77	AI5	G	151	157	Right-handed alpha
Helix 78	AI6	G	162	184	Right-handed alpha

There are 16 sheets in PDB entry 7UY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	220	221	first strand
Strand 2	H	230	231	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	406	411	first strand
Strand 2	H	461	466	anti-parallel
Strand 3	H	380	384	anti-parallel
Strand 4	H	494	499	anti-parallel
Strand 5	H	488	491	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	165	170	anti-parallel
Strand 5	A	729	733	parallel
Strand 6	A	644	655	anti-parallel
Strand 7	A	696	706	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	165	170	anti-parallel
Strand 5	A	729	733	parallel
Strand 6	A	644	655	anti-parallel
Strand 7	A	738	741	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	118	121	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	479	first strand
Strand 2	A	489	492	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	764	767	anti-parallel
Strand 3	A	757	759	anti-parallel
Strand 4	A	531	538	parallel
Strand 5	A	541	547	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	808	813	first strand
Strand 2	A	816	821	anti-parallel
Strand 3	A	613	618	anti-parallel
Strand 4	A	849	852	anti-parallel
Strand 5	A	867	870	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	876	first strand
Strand 2	A	879	881	anti-parallel
Strand 3	A	888	890	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	532	545	first strand
Strand 2	D	587	592	anti-parallel
Strand 3	D	597	602	anti-parallel
Strand 4	D	666	676	parallel
Strand 5	D	649	661	anti-parallel
Strand 6	D	532	545	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	551	554	first strand
Strand 2	D	582	585	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	562	564	first strand
Strand 2	D	570	572	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	76	first strand
Strand 2	E	84	90	anti-parallel
Strand 3	E	95	101	anti-parallel
Strand 4	E	142	149	parallel
Strand 5	E	129	136	anti-parallel
Strand 6	E	66	76	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	91	first strand
Strand 2	F	70	79	anti-parallel
Strand 3	F	82	83	anti-parallel
Strand 4	F	53	60	parallel
Strand 5	F	40	44	anti-parallel
Strand 6	F	25	32	anti-parallel
Strand 7	F	70	79	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	103	117	anti-parallel
Strand 3	G	58	66	anti-parallel
Strand 4	G	71	76	anti-parallel
Strand 5	G	79	85	anti-parallel
Strand 6	G	144	147	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	51	first strand
Strand 2	G	103	117	anti-parallel
Strand 3	G	120	135	anti-parallel
Strand 4	G	79	85	parallel
Strand 5	G	144	147	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UY6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UY6