Analysis of interatomic Contacts of Structural Units in PDB entry:
7UY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UY8 entry

There are 4 chains in PDB entry 7UY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 161	LEU 595
A	SER 1232	LEU 1392
D	LEU 31	ALA 295
C	LEU 18	VAL 399

There are 48 helices in PDB entry 7UY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	161	167	Right-handed alpha
Helix 2	AA2	B	189	208	Right-handed alpha
Helix 3	AA3	B	209	212	Right-handed 310
Helix 4	AA4	B	264	268	Right-handed 310
Helix 5	AA5	B	341	355	Right-handed alpha
Helix 6	AA6	B	370	375	Right-handed alpha
Helix 7	AA7	B	386	403	Right-handed alpha
Helix 8	AA8	B	461	470	Right-handed alpha
Helix 9	AA9	B	477	492	Right-handed alpha
Helix 10	AB1	B	515	520	Right-handed alpha
Helix 11	AB2	B	521	523	Right-handed 310
Helix 12	AB3	B	562	566	Right-handed 310
Helix 13	AB4	A	1234	1239	Right-handed alpha
Helix 14	AB5	A	1279	1300	Right-handed alpha
Helix 15	AB6	A	1328	1342	Right-handed alpha
Helix 16	AB7	A	1346	1351	Right-handed alpha
Helix 17	AB8	A	1354	1374	Right-handed alpha
Helix 18	AB9	A	1382	1387	Right-handed alpha
Helix 19	AC1	A	1388	1390	Right-handed 310
Helix 20	AC2	D	32	45	Right-handed alpha
Helix 21	AC3	D	59	80	Right-handed alpha
Helix 22	AC4	D	95	100	Right-handed alpha
Helix 23	AC5	D	115	142	Right-handed alpha
Helix 24	AC6	D	143	146	Right-handed 310
Helix 25	AC7	D	147	165	Right-handed alpha
Helix 26	AC8	D	168	179	Right-handed alpha
Helix 27	AC9	D	183	190	Right-handed alpha
Helix 28	AD1	D	190	198	Right-handed alpha
Helix 29	AD2	D	228	234	Right-handed 310
Helix 30	AD3	D	247	249	Right-handed 310
Helix 31	AD4	D	250	276	Right-handed alpha
Helix 32	AD5	D	282	292	Right-handed alpha
Helix 33	AD6	C	19	30	Right-handed alpha
Helix 34	AD7	C	32	42	Right-handed alpha
Helix 35	AD8	C	43	46	Right-handed 310
Helix 36	AD9	C	73	84	Right-handed alpha
Helix 37	AE1	C	137	156	Right-handed alpha
Helix 38	AE2	C	179	183	Right-handed 310
Helix 39	AE3	C	184	195	Right-handed alpha
Helix 40	AE4	C	210	215	Right-handed alpha
Helix 41	AE5	C	220	226	Right-handed alpha
Helix 42	AE6	C	238	253	Right-handed alpha
Helix 43	AE7	C	261	269	Right-handed alpha
Helix 44	AE8	C	272	287	Right-handed alpha
Helix 45	AE9	C	288	302	Right-handed alpha
Helix 46	AF1	C	310	321	Right-handed alpha
Helix 47	AF2	C	354	358	Right-handed 310
Helix 48	AF3	C	374	399	Right-handed alpha

There are 10 sheets in PDB entry 7UY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	446	449	anti-parallel
Strand 3	B	454	457	anti-parallel
Strand 4	B	536	538	parallel
Strand 5	B	553	556	parallel
Strand 6	B	547	550	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	262	first strand
Strand 2	B	251	254	anti-parallel
Strand 3	B	232	240	anti-parallel
Strand 4	B	281	286	anti-parallel
Strand 5	B	295	297	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	411	first strand
Strand 2	B	358	362	parallel
Strand 3	B	324	330	parallel
Strand 4	B	570	577	anti-parallel
Strand 5	B	587	594	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1245	1248	first strand
Strand 2	A	1251	1254	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1303	1304	first strand
Strand 2	A	1312	1313	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	243	245	anti-parallel
Strand 3	D	238	239	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	54	59	anti-parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	107	109	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	54	59	anti-parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	336	337	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	169	174	anti-parallel
Strand 3	C	162	166	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	343	first strand
Strand 2	C	348	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UY8