Analysis of interatomic Contacts of Structural Units in PDB entry:
7UYV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UYV entry

There are 8 chains in PDB entry 7UYV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 814	ASP 979
A	VAL 982	SER 1100
B	PRO 814	ASP 979
B	VAL 982	SER 1100
C	GLN 812	ASP 979
C	VAL 982	SER 1100
D	PRO 814	ASP 979
D	VAL 982	SER 1100

There are 55 helices in PDB entry 7UYV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	818	820	Right-handed 310
Helix 2	AA2	A	861	878	Right-handed alpha
Helix 3	AA3	A	909	917	Right-handed alpha
Helix 4	AA4	A	922	943	Right-handed alpha
Helix 5	AA5	A	951	953	Right-handed 310
Helix 6	AA6	A	990	994	Right-handed 310
Helix 7	AA7	A	995	1002	Right-handed alpha
Helix 8	AA8	A	1006	1022	Right-handed alpha
Helix 9	AA9	A	1029	1038	Right-handed alpha
Helix 10	AB1	A	1045	1056	Right-handed alpha
Helix 11	AB2	A	1067	1078	Right-handed alpha
Helix 12	AB3	A	1081	1085	Right-handed 310
Helix 13	AB4	A	1087	1097	Right-handed alpha
Helix 14	AB5	B	818	820	Right-handed 310
Helix 15	AB6	B	861	878	Right-handed alpha
Helix 16	AB7	B	909	917	Right-handed alpha
Helix 17	AB8	B	918	921	Right-handed 310
Helix 18	AB9	B	922	943	Right-handed alpha
Helix 19	AC1	B	951	953	Right-handed 310
Helix 20	AC2	B	990	994	Right-handed 310
Helix 21	AC3	B	995	1002	Right-handed alpha
Helix 22	AC4	B	1006	1022	Right-handed alpha
Helix 23	AC5	B	1025	1028	Right-handed 310
Helix 24	AC6	B	1029	1039	Right-handed alpha
Helix 25	AC7	B	1045	1056	Right-handed alpha
Helix 26	AC8	B	1067	1078	Right-handed alpha
Helix 27	AC9	B	1081	1085	Right-handed 310
Helix 28	AD1	B	1087	1097	Right-handed alpha
Helix 29	AD2	C	861	878	Right-handed alpha
Helix 30	AD3	C	909	917	Right-handed alpha
Helix 31	AD4	C	918	921	Right-handed 310
Helix 32	AD5	C	922	943	Right-handed alpha
Helix 33	AD6	C	951	953	Right-handed 310
Helix 34	AD7	C	990	994	Right-handed 310
Helix 35	AD8	C	995	1002	Right-handed alpha
Helix 36	AD9	C	1005	1022	Right-handed alpha
Helix 37	AE1	C	1025	1028	Right-handed 310
Helix 38	AE2	C	1029	1039	Right-handed alpha
Helix 39	AE3	C	1046	1057	Right-handed alpha
Helix 40	AE4	C	1067	1078	Right-handed alpha
Helix 41	AE5	C	1081	1085	Right-handed 310
Helix 42	AE6	C	1087	1100	Right-handed alpha
Helix 43	AE7	D	818	820	Right-handed 310
Helix 44	AE8	D	861	878	Right-handed alpha
Helix 45	AE9	D	909	917	Right-handed alpha
Helix 46	AF1	D	918	921	Right-handed 310
Helix 47	AF2	D	922	943	Right-handed alpha
Helix 48	AF3	D	951	953	Right-handed 310
Helix 49	AF4	D	990	994	Right-handed 310
Helix 50	AF5	D	995	1001	Right-handed alpha
Helix 51	AF6	D	1006	1022	Right-handed alpha
Helix 52	AF7	D	1029	1038	Right-handed alpha
Helix 53	AF8	D	1045	1057	Right-handed alpha
Helix 54	AF9	D	1067	1078	Right-handed alpha
Helix 55	AG1	D	1087	1097	Right-handed alpha

There are 16 sheets in PDB entry 7UYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	822	830	first strand
Strand 2	A	834	841	anti-parallel
Strand 3	A	851	857	anti-parallel
Strand 4	A	899	903	anti-parallel
Strand 5	A	886	890	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	945	946	first strand
Strand 2	A	972	973	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	959	first strand
Strand 2	A	962	965	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	980	982	first strand
Strand 2	A	1003	1005	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	822	829	first strand
Strand 2	B	834	841	anti-parallel
Strand 3	B	851	857	anti-parallel
Strand 4	B	899	903	anti-parallel
Strand 5	B	886	890	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	945	946	first strand
Strand 2	B	972	973	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	955	959	first strand
Strand 2	B	962	965	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	980	982	first strand
Strand 2	B	1003	1005	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	822	830	first strand
Strand 2	C	834	841	anti-parallel
Strand 3	C	850	857	anti-parallel
Strand 4	C	899	903	anti-parallel
Strand 5	C	886	890	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	945	946	first strand
Strand 2	C	972	973	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	955	959	first strand
Strand 2	C	962	965	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	981	982	first strand
Strand 2	C	1003	1004	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	822	830	first strand
Strand 2	D	834	841	anti-parallel
Strand 3	D	851	857	anti-parallel
Strand 4	D	899	903	anti-parallel
Strand 5	D	886	890	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	945	946	first strand
Strand 2	D	972	973	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	955	959	first strand
Strand 2	D	962	965	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	980	982	first strand
Strand 2	D	1003	1005	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UYV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UYV