Analysis of interatomic Contacts of Structural Units in PDB entry:
7UZY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7UZY entry

There are 11 chains in PDB entry 7UZY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	MET 1	LYS 566
J	ALA 17	LYS 139
I	MET 14	TYR 137
K	GLY 42	ILE 112
D	TYR 2	ASP 207
C	TYR 2	LYS 214
A	TYR 2	LYS 214
B	TYR 2	LYS 214
H	THR 5	VAL 304
G	A 1	U 30
L	A 7	U 21

There are 73 helices in PDB entry 7UZY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	2	12	Right-handed alpha
Helix 2	AA2	F	13	15	Right-handed 310
Helix 3	AA3	F	16	22	Right-handed alpha
Helix 4	AA4	F	32	42	Right-handed alpha
Helix 5	AA5	F	49	58	Right-handed alpha
Helix 6	AA6	F	60	66	Right-handed alpha
Helix 7	AA7	F	74	86	Right-handed alpha
Helix 8	AA8	F	153	170	Right-handed alpha
Helix 9	AA9	F	177	190	Right-handed alpha
Helix 10	AB1	F	205	227	Right-handed alpha
Helix 11	AB2	F	231	236	Right-handed alpha
Helix 12	AB3	F	244	249	Right-handed alpha
Helix 13	AB4	F	261	267	Right-handed alpha
Helix 14	AB5	F	273	300	Right-handed alpha
Helix 15	AB6	F	303	305	Right-handed 310
Helix 16	AB7	F	322	344	Right-handed alpha
Helix 17	AB8	F	358	363	Right-handed alpha
Helix 18	AB9	F	367	384	Right-handed alpha
Helix 19	AC1	F	389	398	Right-handed alpha
Helix 20	AC2	F	419	421	Right-handed 310
Helix 21	AC3	F	424	437	Right-handed alpha
Helix 22	AC4	F	462	470	Right-handed alpha
Helix 23	AC5	F	552	566	Right-handed alpha
Helix 24	AC6	J	18	24	Right-handed alpha
Helix 25	AC7	J	44	47	Right-handed 310
Helix 26	AC8	J	48	61	Right-handed alpha
Helix 27	AC9	J	75	92	Right-handed alpha
Helix 28	AD1	J	92	102	Right-handed alpha
Helix 29	AD2	J	103	115	Right-handed alpha
Helix 30	AD3	J	116	137	Right-handed alpha
Helix 31	AD4	I	15	24	Right-handed alpha
Helix 32	AD5	I	44	47	Right-handed 310
Helix 33	AD6	I	48	65	Right-handed alpha
Helix 34	AD7	I	71	92	Right-handed alpha
Helix 35	AD8	I	92	102	Right-handed alpha
Helix 36	AD9	I	103	115	Right-handed alpha
Helix 37	AE1	I	116	137	Right-handed alpha
Helix 38	AE2	K	44	47	Right-handed 310
Helix 39	AE3	K	48	59	Right-handed alpha
Helix 40	AE4	K	73	92	Right-handed alpha
Helix 41	AE5	K	92	102	Right-handed alpha
Helix 42	AE6	K	103	112	Right-handed alpha
Helix 43	AE7	D	47	63	Right-handed alpha
Helix 44	AE8	D	66	73	Right-handed alpha
Helix 45	AE9	D	76	84	Right-handed alpha
Helix 46	AF1	D	104	114	Right-handed alpha
Helix 47	AF2	D	161	178	Right-handed alpha
Helix 48	AF3	C	47	63	Right-handed alpha
Helix 49	AF4	C	66	72	Right-handed alpha
Helix 50	AF5	C	76	84	Right-handed alpha
Helix 51	AF6	C	104	115	Right-handed alpha
Helix 52	AF7	C	158	160	Right-handed 310
Helix 53	AF8	C	161	178	Right-handed alpha
Helix 54	AF9	C	184	188	Right-handed 310
Helix 55	AG1	A	47	63	Right-handed alpha
Helix 56	AG2	A	66	73	Right-handed alpha
Helix 57	AG3	A	76	84	Right-handed alpha
Helix 58	AG4	A	104	115	Right-handed alpha
Helix 59	AG5	A	158	160	Right-handed 310
Helix 60	AG6	A	161	178	Right-handed alpha
Helix 61	AG7	A	184	188	Right-handed 310
Helix 62	AG8	B	47	63	Right-handed alpha
Helix 63	AG9	B	77	84	Right-handed alpha
Helix 64	AH1	B	104	115	Right-handed alpha
Helix 65	AH2	B	161	178	Right-handed alpha
Helix 66	AH3	H	31	47	Right-handed alpha
Helix 67	AH4	H	50	55	Right-handed alpha
Helix 68	AH5	H	100	106	Right-handed alpha
Helix 69	AH6	H	110	120	Right-handed alpha
Helix 70	AH7	H	168	183	Right-handed alpha
Helix 71	AH8	H	190	194	Right-handed 310
Helix 72	AH9	H	205	213	Right-handed alpha
Helix 73	AI1	H	231	236	Right-handed alpha

There are 21 sheets in PDB entry 7UZY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	311	first strand
Strand 2	F	314	320	anti-parallel
Strand 3	F	252	259	anti-parallel
Strand 4	F	350	357	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	417	418	first strand
Strand 2	F	422	423	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	450	452	first strand
Strand 2	F	456	461	anti-parallel
Strand 3	F	441	445	anti-parallel
Strand 4	F	478	479	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	26	first strand
Strand 2	J	38	39	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	103	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	3	13	anti-parallel
Strand 4	D	192	203	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	124	first strand
Strand 2	D	137	142	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	96	98	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	4	13	anti-parallel
Strand 5	C	192	203	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	127	first strand
Strand 2	C	134	142	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	96	103	anti-parallel
Strand 3	A	147	155	anti-parallel
Strand 4	A	4	13	anti-parallel
Strand 5	A	192	203	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	126	first strand
Strand 2	A	135	142	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	102	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	3	13	anti-parallel
Strand 4	B	192	203	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	127	first strand
Strand 2	B	134	142	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	65	first strand
Strand 2	H	160	162	anti-parallel
Strand 3	H	7	11	anti-parallel
Strand 4	H	199	203	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	165	166	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	73	first strand
Strand 2	H	95	97	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	131	first strand
Strand 2	H	148	154	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	220	221	first strand
Strand 2	H	301	302	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	243	248	first strand
Strand 2	H	262	268	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	283	284	first strand
Strand 2	H	294	295	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7UZY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7UZY