Analysis of interatomic Contacts of Structural Units in PDB entry:
7V00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V00 entry

There are 11 chains in PDB entry 7V00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 2	LYS 214
B	TYR 2	LYS 214
C	TYR 2	LYS 214
D	TYR 2	SER 208
E	LYS 4	GLN 333
F	MET 1	ILE 750
G	A 1	U 30
H	THR 5	VAL 304
I	MET 14	LYS 139
J	ALA 17	LYS 139
K	MET 14	LYS 139

There are102 helices in PDB entry 7V00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	63	Right-handed alpha
Helix 2	AA2	A	66	73	Right-handed alpha
Helix 3	AA3	A	76	84	Right-handed alpha
Helix 4	AA4	A	104	115	Right-handed alpha
Helix 5	AA5	A	158	160	Right-handed 310
Helix 6	AA6	A	161	178	Right-handed alpha
Helix 7	AA7	A	184	188	Right-handed 310
Helix 8	AA8	B	47	62	Right-handed alpha
Helix 9	AA9	B	77	84	Right-handed alpha
Helix 10	AB1	B	104	114	Right-handed alpha
Helix 11	AB2	B	158	160	Right-handed 310
Helix 12	AB3	B	161	178	Right-handed alpha
Helix 13	AB4	B	184	188	Right-handed 310
Helix 14	AB5	C	47	63	Right-handed alpha
Helix 15	AB6	C	66	72	Right-handed alpha
Helix 16	AB7	C	76	84	Right-handed alpha
Helix 17	AB8	C	104	115	Right-handed alpha
Helix 18	AB9	C	158	160	Right-handed 310
Helix 19	AC1	C	161	178	Right-handed alpha
Helix 20	AC2	C	184	188	Right-handed 310
Helix 21	AC3	D	47	63	Right-handed alpha
Helix 22	AC4	D	66	73	Right-handed alpha
Helix 23	AC5	D	76	84	Right-handed alpha
Helix 24	AC6	D	104	115	Right-handed alpha
Helix 25	AC7	D	161	178	Right-handed alpha
Helix 26	AC8	E	42	53	Right-handed alpha
Helix 27	AC9	E	55	65	Right-handed alpha
Helix 28	AD1	E	69	73	Right-handed 310
Helix 29	AD2	E	75	82	Right-handed alpha
Helix 30	AD3	E	85	92	Right-handed alpha
Helix 31	AD4	E	130	147	Right-handed alpha
Helix 32	AD5	E	150	156	Right-handed alpha
Helix 33	AD6	E	167	169	Right-handed 310
Helix 34	AD7	E	211	230	Right-handed alpha
Helix 35	AD8	E	237	247	Right-handed alpha
Helix 36	AD9	E	248	253	Right-handed alpha
Helix 37	AE1	E	278	293	Right-handed alpha
Helix 38	AE2	E	294	296	Right-handed 310
Helix 39	AE3	E	297	303	Right-handed 310
Helix 40	AE4	F	2	12	Right-handed alpha
Helix 41	AE5	F	13	15	Right-handed 310
Helix 42	AE6	F	16	24	Right-handed alpha
Helix 43	AE7	F	32	42	Right-handed alpha
Helix 44	AE8	F	49	58	Right-handed alpha
Helix 45	AE9	F	60	67	Right-handed alpha
Helix 46	AF1	F	74	86	Right-handed alpha
Helix 47	AF2	F	116	122	Right-handed alpha
Helix 48	AF3	F	152	170	Right-handed alpha
Helix 49	AF4	F	177	190	Right-handed alpha
Helix 50	AF5	F	205	227	Right-handed alpha
Helix 51	AF6	F	231	236	Right-handed alpha
Helix 52	AF7	F	239	249	Right-handed alpha
Helix 53	AF8	F	261	267	Right-handed alpha
Helix 54	AF9	F	273	300	Right-handed alpha
Helix 55	AG1	F	303	305	Right-handed 310
Helix 56	AG2	F	322	344	Right-handed alpha
Helix 57	AG3	F	358	363	Right-handed alpha
Helix 58	AG4	F	367	384	Right-handed alpha
Helix 59	AG5	F	389	398	Right-handed alpha
Helix 60	AG6	F	419	421	Right-handed 310
Helix 61	AG7	F	424	437	Right-handed alpha
Helix 62	AG8	F	462	472	Right-handed alpha
Helix 63	AG9	F	500	505	Right-handed 310
Helix 64	AH1	F	513	518	Right-handed alpha
Helix 65	AH2	F	536	542	Right-handed alpha
Helix 66	AH3	F	550	573	Right-handed alpha
Helix 67	AH4	F	594	612	Right-handed alpha
Helix 68	AH5	F	630	636	Right-handed alpha
Helix 69	AH6	F	665	670	Right-handed alpha
Helix 70	AH7	F	674	686	Right-handed alpha
Helix 71	AH8	F	690	703	Right-handed alpha
Helix 72	AH9	F	705	719	Right-handed alpha
Helix 73	AI1	F	722	734	Right-handed alpha
Helix 74	AI2	F	735	750	Right-handed alpha
Helix 75	AI3	H	31	47	Right-handed alpha
Helix 76	AI4	H	100	106	Right-handed alpha
Helix 77	AI5	H	110	120	Right-handed alpha
Helix 78	AI6	H	168	183	Right-handed alpha
Helix 79	AI7	H	190	194	Right-handed 310
Helix 80	AI8	H	205	213	Right-handed alpha
Helix 81	AI9	H	231	236	Right-handed alpha
Helix 82	AJ1	I	15	24	Right-handed alpha
Helix 83	AJ2	I	44	47	Right-handed 310
Helix 84	AJ3	I	48	65	Right-handed alpha
Helix 85	AJ4	I	71	92	Right-handed alpha
Helix 86	AJ5	I	92	102	Right-handed alpha
Helix 87	AJ6	I	103	115	Right-handed alpha
Helix 88	AJ7	I	116	137	Right-handed alpha
Helix 89	AJ8	J	18	24	Right-handed alpha
Helix 90	AJ9	J	44	47	Right-handed 310
Helix 91	AK1	J	48	61	Right-handed alpha
Helix 92	AK2	J	75	92	Right-handed alpha
Helix 93	AK3	J	92	102	Right-handed alpha
Helix 94	AK4	J	103	115	Right-handed alpha
Helix 95	AK5	J	116	137	Right-handed alpha
Helix 96	AK6	K	15	24	Right-handed alpha
Helix 97	AK7	K	44	47	Right-handed 310
Helix 98	AK8	K	48	65	Right-handed alpha
Helix 99	AK9	K	71	92	Right-handed alpha
Helix 100	AL1	K	92	102	Right-handed alpha
Helix 101	AL2	K	103	115	Right-handed alpha
Helix 102	AL3	K	116	137	Right-handed alpha

There are 28 sheets in PDB entry 7V00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	103	first strand
Strand 2	A	147	155	anti-parallel
Strand 3	A	4	13	anti-parallel
Strand 4	A	192	203	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	137	142	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	3	13	anti-parallel
Strand 4	B	192	203	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	127	first strand
Strand 2	B	134	142	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	96	98	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	147	155	anti-parallel
Strand 4	C	4	13	anti-parallel
Strand 5	C	192	203	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	127	first strand
Strand 2	C	134	142	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	103	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	3	13	anti-parallel
Strand 4	D	192	203	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	43	44	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	124	first strand
Strand 2	D	137	142	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	160	first strand
Strand 2	E	198	205	anti-parallel
Strand 3	E	5	11	anti-parallel
Strand 4	E	327	331	anti-parallel
Strand 5	E	257	259	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	116	119	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	41	first strand
Strand 2	E	93	97	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	193	first strand
Strand 2	E	171	178	anti-parallel
Strand 3	E	312	315	anti-parallel
Strand 4	E	322	324	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	311	first strand
Strand 2	F	314	320	anti-parallel
Strand 3	F	252	259	anti-parallel
Strand 4	F	350	357	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	417	418	first strand
Strand 2	F	422	423	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	450	452	first strand
Strand 2	F	456	461	anti-parallel
Strand 3	F	441	445	anti-parallel
Strand 4	F	478	479	anti-parallel
Strand 5	F	491	492	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	578	584	first strand
Strand 2	F	587	593	anti-parallel
Strand 3	F	525	533	anti-parallel
Strand 4	F	618	626	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	65	first strand
Strand 2	H	160	162	anti-parallel
Strand 3	H	8	11	anti-parallel
Strand 4	H	199	202	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	165	166	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	73	first strand
Strand 2	H	95	97	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	131	first strand
Strand 2	H	148	154	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	273	274	first strand
Strand 2	H	219	221	anti-parallel
Strand 3	H	301	302	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	243	246	first strand
Strand 2	H	265	268	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	283	284	first strand
Strand 2	H	294	295	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	26	first strand
Strand 2	I	38	39	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	26	first strand
Strand 2	J	38	39	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V00

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V00