Analysis of interatomic Contacts of Structural Units in PDB entry:
7V01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V01 entry

There are 10 chains in PDB entry 7V01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 2	LYS 214
B	TYR 2	LYS 214
C	TYR 2	LYS 214
E	LYS 4	GLN 333
F	MET 1	ILE 750
G	A 1	U 30
H	THR 5	VAL 304
I	MET 14	LYS 139
K	MET 14	LYS 139
U	A 7	C 32

There are 93 helices in PDB entry 7V01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	63	Right-handed alpha
Helix 2	AA2	A	66	73	Right-handed alpha
Helix 3	AA3	A	76	84	Right-handed alpha
Helix 4	AA4	A	104	114	Right-handed alpha
Helix 5	AA5	A	161	178	Right-handed alpha
Helix 6	AA6	A	184	188	Right-handed 310
Helix 7	AA7	B	47	62	Right-handed alpha
Helix 8	AA8	B	77	84	Right-handed alpha
Helix 9	AA9	B	104	115	Right-handed alpha
Helix 10	AB1	B	158	160	Right-handed 310
Helix 11	AB2	B	161	178	Right-handed alpha
Helix 12	AB3	B	184	188	Right-handed 310
Helix 13	AB4	C	47	63	Right-handed alpha
Helix 14	AB5	C	66	72	Right-handed alpha
Helix 15	AB6	C	76	83	Right-handed alpha
Helix 16	AB7	C	104	115	Right-handed alpha
Helix 17	AB8	C	158	160	Right-handed 310
Helix 18	AB9	C	161	178	Right-handed alpha
Helix 19	AC1	C	184	188	Right-handed 310
Helix 20	AC2	E	42	53	Right-handed alpha
Helix 21	AC3	E	55	65	Right-handed alpha
Helix 22	AC4	E	69	73	Right-handed 310
Helix 23	AC5	E	75	82	Right-handed alpha
Helix 24	AC6	E	85	92	Right-handed alpha
Helix 25	AC7	E	130	147	Right-handed alpha
Helix 26	AC8	E	167	169	Right-handed 310
Helix 27	AC9	E	211	231	Right-handed alpha
Helix 28	AD1	E	237	248	Right-handed alpha
Helix 29	AD2	E	248	253	Right-handed alpha
Helix 30	AD3	E	278	294	Right-handed alpha
Helix 31	AD4	E	295	296	Right-handed 310
Helix 32	AD5	E	297	303	Right-handed 310
Helix 33	AD6	F	2	13	Right-handed alpha
Helix 34	AD7	F	16	24	Right-handed alpha
Helix 35	AD8	F	26	31	Right-handed 310
Helix 36	AD9	F	32	42	Right-handed alpha
Helix 37	AE1	F	49	58	Right-handed alpha
Helix 38	AE2	F	60	66	Right-handed alpha
Helix 39	AE3	F	73	86	Right-handed alpha
Helix 40	AE4	F	116	122	Right-handed alpha
Helix 41	AE5	F	152	170	Right-handed alpha
Helix 42	AE6	F	174	176	Right-handed 310
Helix 43	AE7	F	177	190	Right-handed alpha
Helix 44	AE8	F	205	227	Right-handed alpha
Helix 45	AE9	F	231	237	Right-handed alpha
Helix 46	AF1	F	239	249	Right-handed alpha
Helix 47	AF2	F	261	266	Right-handed alpha
Helix 48	AF3	F	273	300	Right-handed alpha
Helix 49	AF4	F	303	305	Right-handed 310
Helix 50	AF5	F	322	344	Right-handed alpha
Helix 51	AF6	F	358	363	Right-handed alpha
Helix 52	AF7	F	367	384	Right-handed alpha
Helix 53	AF8	F	389	398	Right-handed alpha
Helix 54	AF9	F	418	422	Right-handed 310
Helix 55	AG1	F	423	437	Right-handed alpha
Helix 56	AG2	F	462	472	Right-handed alpha
Helix 57	AG3	F	500	505	Right-handed 310
Helix 58	AG4	F	513	518	Right-handed alpha
Helix 59	AG5	F	536	542	Right-handed alpha
Helix 60	AG6	F	550	567	Right-handed alpha
Helix 61	AG7	F	567	573	Right-handed alpha
Helix 62	AG8	F	574	576	Right-handed 310
Helix 63	AG9	F	593	612	Right-handed alpha
Helix 64	AH1	F	630	636	Right-handed alpha
Helix 65	AH2	F	665	670	Right-handed alpha
Helix 66	AH3	F	674	686	Right-handed alpha
Helix 67	AH4	F	690	703	Right-handed alpha
Helix 68	AH5	F	705	719	Right-handed alpha
Helix 69	AH6	F	722	734	Right-handed alpha
Helix 70	AH7	F	735	750	Right-handed alpha
Helix 71	AH8	H	31	47	Right-handed alpha
Helix 72	AH9	H	100	106	Right-handed alpha
Helix 73	AI1	H	110	121	Right-handed alpha
Helix 74	AI2	H	136	140	Right-handed 310
Helix 75	AI3	H	168	183	Right-handed alpha
Helix 76	AI4	H	190	194	Right-handed 310
Helix 77	AI5	H	205	213	Right-handed alpha
Helix 78	AI6	H	231	236	Right-handed alpha
Helix 79	AI7	H	256	260	Right-handed 310
Helix 80	AI8	I	15	24	Right-handed alpha
Helix 81	AI9	I	44	47	Right-handed 310
Helix 82	AJ1	I	48	65	Right-handed alpha
Helix 83	AJ2	I	71	92	Right-handed alpha
Helix 84	AJ3	I	92	102	Right-handed alpha
Helix 85	AJ4	I	103	115	Right-handed alpha
Helix 86	AJ5	I	116	137	Right-handed alpha
Helix 87	AJ6	K	15	24	Right-handed alpha
Helix 88	AJ7	K	44	47	Right-handed 310
Helix 89	AJ8	K	48	65	Right-handed alpha
Helix 90	AJ9	K	71	92	Right-handed alpha
Helix 91	AK1	K	92	102	Right-handed alpha
Helix 92	AK2	K	103	115	Right-handed alpha
Helix 93	AK3	K	116	137	Right-handed alpha

There are 26 sheets in PDB entry 7V01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	147	155	anti-parallel
Strand 3	A	102	103	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	147	155	anti-parallel
Strand 3	A	4	13	anti-parallel
Strand 4	A	192	203	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	43	44	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	137	142	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	102	103	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	147	156	anti-parallel
Strand 3	B	3	13	anti-parallel
Strand 4	B	192	203	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	137	142	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	147	156	anti-parallel
Strand 4	C	96	98	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	147	156	anti-parallel
Strand 4	C	3	13	anti-parallel
Strand 5	C	192	203	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	124	first strand
Strand 2	C	137	142	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	160	first strand
Strand 2	E	198	205	anti-parallel
Strand 3	E	5	12	anti-parallel
Strand 4	E	327	331	anti-parallel
Strand 5	E	257	259	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	116	119	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	E	37	41	anti-parallel
Strand 3	E	93	97	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	193	first strand
Strand 2	E	171	179	anti-parallel
Strand 3	E	311	316	anti-parallel
Strand 4	E	321	324	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	311	first strand
Strand 2	F	314	320	anti-parallel
Strand 3	F	252	259	anti-parallel
Strand 4	F	350	357	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	450	452	first strand
Strand 2	F	456	461	anti-parallel
Strand 3	F	441	445	anti-parallel
Strand 4	F	479	480	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	578	584	first strand
Strand 2	F	587	592	anti-parallel
Strand 3	F	525	533	anti-parallel
Strand 4	F	618	626	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	65	first strand
Strand 2	H	160	162	anti-parallel
Strand 3	H	7	11	anti-parallel
Strand 4	H	199	203	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	165	166	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	73	first strand
Strand 2	H	95	97	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	131	first strand
Strand 2	H	148	154	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	273	274	first strand
Strand 2	H	219	221	anti-parallel
Strand 3	H	301	302	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	243	246	first strand
Strand 2	H	265	268	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	281	284	first strand
Strand 2	H	294	297	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	26	first strand
Strand 2	I	38	39	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	25	26	first strand
Strand 2	K	38	39	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V01

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V01