Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 7V1A entry
There are 4 chains in PDB entry 7V1A
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
ALA 1357 | PRO 1656 |
B
|
ASP 7 | GLU 18 |
B
|
ASP 20 | LEU 22 |
B
|
GLN 24 | SER 25 |
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There are 13
helices in PDB entry 7V1A. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| 1359 |
1375 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 1376 |
1378 | Right-handed 310 |
| Helix 3 |
AA3 | A
| 1388 |
1417 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 1418 |
1451 | Right-handed alpha |
| Helix 5 |
AA5 | A
| 1463 |
1481 | Right-handed alpha |
| Helix 6 |
AA6 | A
| 1487 |
1516 | Right-handed alpha |
| Helix 7 |
AA7 | A
| 1518 |
1546 | Right-handed alpha |
| Helix 8 |
AA8 | A
| 1551 |
1577 | Right-handed alpha |
| Helix 9 |
AA9 | A
| 1578 |
1582 | Right-handed 310 |
| Helix 10 |
AB1 | A
| 1589 |
1623 | Right-handed alpha |
| Helix 11 |
AB2 | A
| 1626 |
1654 | Right-handed alpha |
| Helix 12 |
AB3 | B
| 8 |
16 | Right-handed alpha |
| Helix 13 |
AB4 | B
| 19 |
24 | Right-handed alpha |
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There are no sheets in PDB entry
7V1A
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il