Analysis of interatomic Contacts of Structural Units in PDB entry:
7V1Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V1Y entry

There are 8 chains in PDB entry 7V1Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 103	SER 546
C	CYS 103	SER 546
B	CYS 103	SER 546
D	CYS 103	SER 546
E	ALA 1	ALA 2
F	ALA 1	ALA 2
G	ALA 1	ALA 2
H	ALA 1	ALA 2

There are 60 helices in PDB entry 7V1Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	123	Right-handed alpha
Helix 2	AA2	A	165	180	Right-handed alpha
Helix 3	AA3	A	188	192	Right-handed 310
Helix 4	AA4	A	209	215	Right-handed alpha
Helix 5	AA5	A	226	235	Right-handed alpha
Helix 6	AA6	A	290	294	Right-handed 310
Helix 7	AA7	A	300	305	Right-handed alpha
Helix 8	AA8	A	306	308	Right-handed 310
Helix 9	AA9	A	325	340	Right-handed alpha
Helix 10	AB1	A	342	354	Right-handed alpha
Helix 11	AB2	A	394	399	Right-handed alpha
Helix 12	AB3	A	403	424	Right-handed alpha
Helix 13	AB4	A	436	444	Right-handed alpha
Helix 14	AB5	A	504	511	Right-handed alpha
Helix 15	AB6	A	530	545	Right-handed alpha
Helix 16	AB7	C	104	123	Right-handed alpha
Helix 17	AB8	C	165	180	Right-handed alpha
Helix 18	AB9	C	188	192	Right-handed 310
Helix 19	AC1	C	209	215	Right-handed alpha
Helix 20	AC2	C	226	235	Right-handed alpha
Helix 21	AC3	C	290	294	Right-handed 310
Helix 22	AC4	C	300	305	Right-handed alpha
Helix 23	AC5	C	306	308	Right-handed 310
Helix 24	AC6	C	325	340	Right-handed alpha
Helix 25	AC7	C	342	354	Right-handed alpha
Helix 26	AC8	C	394	399	Right-handed alpha
Helix 27	AC9	C	403	424	Right-handed alpha
Helix 28	AD1	C	436	444	Right-handed alpha
Helix 29	AD2	C	504	511	Right-handed alpha
Helix 30	AD3	C	530	545	Right-handed alpha
Helix 31	AD4	B	104	123	Right-handed alpha
Helix 32	AD5	B	165	180	Right-handed alpha
Helix 33	AD6	B	188	192	Right-handed 310
Helix 34	AD7	B	209	215	Right-handed alpha
Helix 35	AD8	B	226	235	Right-handed alpha
Helix 36	AD9	B	290	294	Right-handed 310
Helix 37	AE1	B	300	305	Right-handed alpha
Helix 38	AE2	B	306	308	Right-handed 310
Helix 39	AE3	B	325	340	Right-handed alpha
Helix 40	AE4	B	342	354	Right-handed alpha
Helix 41	AE5	B	394	399	Right-handed alpha
Helix 42	AE6	B	403	424	Right-handed alpha
Helix 43	AE7	B	436	444	Right-handed alpha
Helix 44	AE8	B	504	511	Right-handed alpha
Helix 45	AE9	B	530	545	Right-handed alpha
Helix 46	AF1	D	104	123	Right-handed alpha
Helix 47	AF2	D	165	180	Right-handed alpha
Helix 48	AF3	D	188	192	Right-handed 310
Helix 49	AF4	D	209	215	Right-handed alpha
Helix 50	AF5	D	226	235	Right-handed alpha
Helix 51	AF6	D	290	294	Right-handed 310
Helix 52	AF7	D	300	305	Right-handed alpha
Helix 53	AF8	D	306	308	Right-handed 310
Helix 54	AF9	D	325	340	Right-handed alpha
Helix 55	AG1	D	342	354	Right-handed alpha
Helix 56	AG2	D	394	399	Right-handed alpha
Helix 57	AG3	D	403	424	Right-handed alpha
Helix 58	AG4	D	436	444	Right-handed alpha
Helix 59	AG5	D	504	511	Right-handed alpha
Helix 60	AG6	D	530	545	Right-handed alpha

There are 12 sheets in PDB entry 7V1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	136	147	anti-parallel
Strand 3	A	126	133	anti-parallel
Strand 4	A	516	523	anti-parallel
Strand 5	A	492	500	anti-parallel
Strand 6	A	482	489	anti-parallel
Strand 7	A	465	467	anti-parallel
Strand 8	A	459	460	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	400	401	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	383	385	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	136	147	anti-parallel
Strand 3	C	126	133	anti-parallel
Strand 4	C	516	523	anti-parallel
Strand 5	C	492	500	anti-parallel
Strand 6	C	482	489	anti-parallel
Strand 7	C	465	467	anti-parallel
Strand 8	C	459	460	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	400	401	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	383	385	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	136	147	anti-parallel
Strand 3	B	126	133	anti-parallel
Strand 4	B	516	523	anti-parallel
Strand 5	B	492	500	anti-parallel
Strand 6	B	482	489	anti-parallel
Strand 7	B	465	467	anti-parallel
Strand 8	B	459	460	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	400	402	anti-parallel
Strand 3	B	360	361	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	383	385	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	136	147	anti-parallel
Strand 3	D	126	133	anti-parallel
Strand 4	D	516	523	anti-parallel
Strand 5	D	492	500	anti-parallel
Strand 6	D	482	489	anti-parallel
Strand 7	D	465	467	anti-parallel
Strand 8	D	459	460	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	361	first strand
Strand 2	D	400	401	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	377	first strand
Strand 2	D	383	385	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V1Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V1Y