Analysis of interatomic Contacts of Structural Units in PDB entry:
7V27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V27 entry

There are 3 chains in PDB entry 7V27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
ASN 334PRO 527
B
GLN 1SER 120
A
ALA 3LEU 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 7V27. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
C
337 343Right-handed alpha
Helix 2
AA2
C
349 353Right-handed 310
Helix 3
AA3
C
365 370Right-handed alpha
Helix 4
AA4
B
88 92Right-handed 310
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There are 10 sheets in PDB entry 7V27. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
356 357first strand
Strand 2
C
396 402anti-parallel
Strand 3
C
508 512anti-parallel
Strand 4
C
435 437anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
379 380first strand
Strand 2
C
431 432anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 7first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
81 85anti-parallel
Strand 4
B
70 71anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 12first strand
Strand 2
B
114 118parallel
Strand 3
B
93 96anti-parallel
Strand 4
B
35 41anti-parallel
Strand 5
B
48 54anti-parallel
Strand 6
B
60 61anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
11 12first strand
Strand 2
B
114 118parallel
Strand 3
B
93 96anti-parallel
Strand 4
B
35 41anti-parallel
Strand 5
B
99 100anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 12first strand
Strand 2
A
107 108parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 22first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
65 68anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 50first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
98 99anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 50first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
104 105anti-parallel
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