Analysis of interatomic Contacts of Structural Units in PDB entry:
7V28

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V28 entry

There are 6 chains in PDB entry 7V28 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 423
B	MET 1	GLY 425
C	MET 1	LEU 423
D	MET 1	LEU 423
E	MET 1	LEU 423
F	MET 1	LEU 423

There are 89 helices in PDB entry 7V28. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	12	Right-handed alpha
Helix 2	AA2	A	17	24	Right-handed alpha
Helix 3	AA3	A	33	37	Right-handed alpha
Helix 4	AA4	A	76	80	Right-handed 310
Helix 5	AA5	A	138	142	Right-handed 310
Helix 6	AA6	A	168	175	Right-handed alpha
Helix 7	AA7	A	178	189	Right-handed 310
Helix 8	AA8	A	291	300	Right-handed alpha
Helix 9	AA9	A	319	323	Right-handed 310
Helix 10	AB1	A	324	330	Right-handed alpha
Helix 11	AB2	A	338	350	Right-handed alpha
Helix 12	AB3	A	355	359	Right-handed 310
Helix 13	AB4	A	362	364	Right-handed 310
Helix 14	AB5	A	365	383	Right-handed alpha
Helix 15	AB6	A	391	395	Right-handed 310
Helix 16	AB7	B	3	12	Right-handed alpha
Helix 17	AB8	B	17	24	Right-handed alpha
Helix 18	AB9	B	33	37	Right-handed alpha
Helix 19	AC1	B	76	80	Right-handed 310
Helix 20	AC2	B	113	118	Right-handed alpha
Helix 21	AC3	B	138	142	Right-handed 310
Helix 22	AC4	B	168	177	Right-handed alpha
Helix 23	AC5	B	178	185	Right-handed alpha
Helix 24	AC6	B	291	300	Right-handed alpha
Helix 25	AC7	B	319	323	Right-handed 310
Helix 26	AC8	B	324	330	Right-handed alpha
Helix 27	AC9	B	338	350	Right-handed alpha
Helix 28	AD1	B	355	359	Right-handed 310
Helix 29	AD2	B	365	383	Right-handed alpha
Helix 30	AD3	B	391	395	Right-handed 310
Helix 31	AD4	C	3	12	Right-handed alpha
Helix 32	AD5	C	17	24	Right-handed alpha
Helix 33	AD6	C	33	37	Right-handed alpha
Helix 34	AD7	C	76	80	Right-handed 310
Helix 35	AD8	C	138	142	Right-handed 310
Helix 36	AD9	C	168	177	Right-handed alpha
Helix 37	AE1	C	178	182	Right-handed 310
Helix 38	AE2	C	184	189	Right-handed 310
Helix 39	AE3	C	291	300	Right-handed alpha
Helix 40	AE4	C	319	323	Right-handed 310
Helix 41	AE5	C	324	331	Right-handed alpha
Helix 42	AE6	C	338	350	Right-handed alpha
Helix 43	AE7	C	355	359	Right-handed 310
Helix 44	AE8	C	362	364	Right-handed 310
Helix 45	AE9	C	365	384	Right-handed alpha
Helix 46	AF1	C	391	395	Right-handed 310
Helix 47	AF2	D	3	12	Right-handed alpha
Helix 48	AF3	D	17	24	Right-handed alpha
Helix 49	AF4	D	33	37	Right-handed alpha
Helix 50	AF5	D	76	80	Right-handed 310
Helix 51	AF6	D	138	142	Right-handed 310
Helix 52	AF7	D	168	177	Right-handed alpha
Helix 53	AF8	D	180	189	Right-handed 310
Helix 54	AF9	D	291	299	Right-handed alpha
Helix 55	AG1	D	316	323	Right-handed 310
Helix 56	AG2	D	324	330	Right-handed alpha
Helix 57	AG3	D	338	350	Right-handed alpha
Helix 58	AG4	D	355	359	Right-handed 310
Helix 59	AG5	D	362	364	Right-handed 310
Helix 60	AG6	D	365	384	Right-handed alpha
Helix 61	AG7	D	391	395	Right-handed 310
Helix 62	AG8	E	3	12	Right-handed alpha
Helix 63	AG9	E	17	24	Right-handed alpha
Helix 64	AH1	E	33	37	Right-handed alpha
Helix 65	AH2	E	76	80	Right-handed 310
Helix 66	AH3	E	168	175	Right-handed alpha
Helix 67	AH4	E	179	189	Right-handed 310
Helix 68	AH5	E	291	300	Right-handed alpha
Helix 69	AH6	E	316	323	Right-handed 310
Helix 70	AH7	E	324	330	Right-handed alpha
Helix 71	AH8	E	338	349	Right-handed alpha
Helix 72	AH9	E	355	359	Right-handed 310
Helix 73	AI1	E	362	364	Right-handed 310
Helix 74	AI2	E	365	384	Right-handed alpha
Helix 75	AI3	F	3	12	Right-handed alpha
Helix 76	AI4	F	17	24	Right-handed alpha
Helix 77	AI5	F	33	37	Right-handed alpha
Helix 78	AI6	F	76	80	Right-handed 310
Helix 79	AI7	F	138	142	Right-handed 310
Helix 80	AI8	F	168	175	Right-handed alpha
Helix 81	AI9	F	180	184	Right-handed 310
Helix 82	AJ1	F	291	300	Right-handed alpha
Helix 83	AJ2	F	319	323	Right-handed 310
Helix 84	AJ3	F	324	330	Right-handed alpha
Helix 85	AJ4	F	338	349	Right-handed alpha
Helix 86	AJ5	F	355	359	Right-handed 310
Helix 87	AJ6	F	362	364	Right-handed 310
Helix 88	AJ7	F	365	383	Right-handed alpha
Helix 89	AJ8	F	391	395	Right-handed 310

There are 30 sheets in PDB entry 7V28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	131	135	anti-parallel
Strand 3	A	125	128	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	51	57	anti-parallel
Strand 3	A	63	67	anti-parallel
Strand 4	A	122	123	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	86	88	anti-parallel
Strand 3	A	94	96	anti-parallel
Strand 4	A	102	105	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	165	first strand
Strand 2	A	276	284	anti-parallel
Strand 3	A	262	270	anti-parallel
Strand 4	A	253	256	anti-parallel
Strand 5	A	247	249	anti-parallel
Strand 6	A	224	231	anti-parallel
Strand 7	A	215	221	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	165	first strand
Strand 2	A	276	284	anti-parallel
Strand 3	A	262	270	anti-parallel
Strand 4	A	253	256	anti-parallel
Strand 5	A	247	249	anti-parallel
Strand 6	A	224	231	anti-parallel
Strand 7	A	240	245	anti-parallel
Strand 8	A	403	408	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	131	134	anti-parallel
Strand 3	B	125	128	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	51	57	anti-parallel
Strand 3	B	63	67	anti-parallel
Strand 4	B	122	123	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	87	88	anti-parallel
Strand 3	B	95	96	anti-parallel
Strand 4	B	102	104	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	165	first strand
Strand 2	B	275	284	anti-parallel
Strand 3	B	263	272	anti-parallel
Strand 4	B	253	256	anti-parallel
Strand 5	B	240	249	anti-parallel
Strand 6	B	224	231	anti-parallel
Strand 7	B	215	221	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	165	first strand
Strand 2	B	275	284	anti-parallel
Strand 3	B	263	272	anti-parallel
Strand 4	B	253	256	anti-parallel
Strand 5	B	240	249	anti-parallel
Strand 6	B	403	408	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	131	134	anti-parallel
Strand 3	C	125	128	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	51	57	anti-parallel
Strand 3	C	63	67	anti-parallel
Strand 4	C	122	123	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	86	88	anti-parallel
Strand 3	C	95	96	anti-parallel
Strand 4	C	102	104	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	165	first strand
Strand 2	C	275	284	anti-parallel
Strand 3	C	263	272	anti-parallel
Strand 4	C	253	256	anti-parallel
Strand 5	C	240	249	anti-parallel
Strand 6	C	224	231	anti-parallel
Strand 7	C	215	220	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	165	first strand
Strand 2	C	275	284	anti-parallel
Strand 3	C	263	272	anti-parallel
Strand 4	C	253	256	anti-parallel
Strand 5	C	240	249	anti-parallel
Strand 6	C	403	408	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	32	first strand
Strand 2	D	131	134	anti-parallel
Strand 3	D	125	128	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	51	57	anti-parallel
Strand 3	D	63	67	anti-parallel
Strand 4	D	122	123	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	86	88	anti-parallel
Strand 3	D	94	96	anti-parallel
Strand 4	D	102	105	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	165	first strand
Strand 2	D	275	284	anti-parallel
Strand 3	D	263	272	anti-parallel
Strand 4	D	253	256	anti-parallel
Strand 5	D	240	249	anti-parallel
Strand 6	D	224	231	anti-parallel
Strand 7	D	215	220	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	165	first strand
Strand 2	D	275	284	anti-parallel
Strand 3	D	263	272	anti-parallel
Strand 4	D	253	256	anti-parallel
Strand 5	D	240	249	anti-parallel
Strand 6	D	403	408	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	32	first strand
Strand 2	E	131	134	anti-parallel
Strand 3	E	125	128	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	48	first strand
Strand 2	E	51	57	anti-parallel
Strand 3	E	63	67	anti-parallel
Strand 4	E	122	123	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	82	first strand
Strand 2	E	87	88	anti-parallel
Strand 3	E	94	96	anti-parallel
Strand 4	E	102	105	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	165	first strand
Strand 2	E	275	284	anti-parallel
Strand 3	E	263	272	anti-parallel
Strand 4	E	253	256	anti-parallel
Strand 5	E	240	249	anti-parallel
Strand 6	E	224	231	anti-parallel
Strand 7	E	215	220	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	165	first strand
Strand 2	E	275	284	anti-parallel
Strand 3	E	263	272	anti-parallel
Strand 4	E	253	256	anti-parallel
Strand 5	E	240	249	anti-parallel
Strand 6	E	403	408	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	32	first strand
Strand 2	F	131	134	anti-parallel
Strand 3	F	125	128	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	48	first strand
Strand 2	F	51	57	anti-parallel
Strand 3	F	63	67	anti-parallel
Strand 4	F	122	123	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	82	first strand
Strand 2	F	87	88	anti-parallel
Strand 3	F	94	96	anti-parallel
Strand 4	F	102	105	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	165	first strand
Strand 2	F	275	284	anti-parallel
Strand 3	F	263	272	anti-parallel
Strand 4	F	253	256	anti-parallel
Strand 5	F	240	249	anti-parallel
Strand 6	F	224	231	anti-parallel
Strand 7	F	215	220	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	165	first strand
Strand 2	F	275	284	anti-parallel
Strand 3	F	263	272	anti-parallel
Strand 4	F	253	256	anti-parallel
Strand 5	F	240	249	anti-parallel
Strand 6	F	403	408	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V28

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V28