Analysis of interatomic Contacts of Structural Units in PDB entry:
7V2B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V2B entry

There are 2 chains in PDB entry 7V2B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	LEU 382
D	MET 7	LEU 382

There are 41 helices in PDB entry 7V2B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	24	Right-handed 310
Helix 2	AA2	A	25	30	Right-handed alpha
Helix 3	AA3	A	41	52	Right-handed alpha
Helix 4	AA4	A	66	76	Right-handed alpha
Helix 5	AA5	A	93	101	Right-handed 310
Helix 6	AA6	A	113	135	Right-handed alpha
Helix 7	AA7	A	143	148	Right-handed 310
Helix 8	AA8	A	151	164	Right-handed alpha
Helix 9	AA9	A	179	189	Right-handed alpha
Helix 10	AB1	A	207	213	Right-handed alpha
Helix 11	AB2	A	227	232	Right-handed alpha
Helix 12	AB3	A	241	245	Right-handed 310
Helix 13	AB4	A	246	260	Right-handed alpha
Helix 14	AB5	A	282	289	Right-handed alpha
Helix 15	AB6	A	293	301	Right-handed alpha
Helix 16	AB7	A	314	332	Right-handed alpha
Helix 17	AB8	A	340	348	Right-handed alpha
Helix 18	AB9	A	354	368	Right-handed alpha
Helix 19	AC1	A	376	380	Right-handed 310
Helix 20	AC2	D	21	24	Right-handed 310
Helix 21	AC3	D	25	30	Right-handed alpha
Helix 22	AC4	D	42	52	Right-handed alpha
Helix 23	AC5	D	66	76	Right-handed alpha
Helix 24	AC6	D	94	99	Right-handed alpha
Helix 25	AC7	D	100	102	Right-handed 310
Helix 26	AC8	D	113	123	Right-handed alpha
Helix 27	AC9	D	124	135	Right-handed alpha
Helix 28	AD1	D	136	138	Right-handed 310
Helix 29	AD2	D	140	146	Right-handed 310
Helix 30	AD3	D	151	164	Right-handed alpha
Helix 31	AD4	D	179	189	Right-handed alpha
Helix 32	AD5	D	204	206	Right-handed 310
Helix 33	AD6	D	207	213	Right-handed alpha
Helix 34	AD7	D	227	232	Right-handed alpha
Helix 35	AD8	D	246	260	Right-handed alpha
Helix 36	AD9	D	282	289	Right-handed alpha
Helix 37	AE1	D	293	301	Right-handed alpha
Helix 38	AE2	D	315	330	Right-handed alpha
Helix 39	AE3	D	340	348	Right-handed alpha
Helix 40	AE4	D	354	370	Right-handed alpha
Helix 41	AE5	D	376	380	Right-handed 310

There are 8 sheets in PDB entry 7V2B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	11	15	parallel
Strand 3	A	54	59	parallel
Strand 4	A	82	87	parallel
Strand 5	A	106	108	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	202	first strand
Strand 2	A	236	240	parallel
Strand 3	A	274	279	parallel
Strand 4	A	170	174	parallel
Strand 5	A	303	307	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	269	270	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	374	375	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	12	15	parallel
Strand 3	D	55	59	parallel
Strand 4	D	84	87	parallel
Strand 5	D	107	108	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	202	first strand
Strand 2	D	236	240	parallel
Strand 3	D	274	279	parallel
Strand 4	D	170	174	parallel
Strand 5	D	303	307	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	D	269	270	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	374	375	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V2B

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V2B