Analysis of interatomic Contacts of Structural Units in PDB entry:
7V2M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V2M entry

There are 23 chains in PDB entry 7V2M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 5	A 1509
B	VAL 7	ARG 226
C	GLY 2	VAL 207
D	GLY 2	ARG 209
E	ASP 5	GLY 154
F	MET 1	ALA 101
G	ALA 2	TRP 156
H	MET 1	TRP 138
I	GLU 2	ARG 128
J	LYS 3	THR 100
K	LYS 11	SER 129
L	PRO 2	ALA 125
M	ALA 2	ARG 114
N	ALA 2	TRP 61
O	PRO 2	GLY 89
P	MET 1	ARG 81
Q	PRO 2	ARG 101
R	ALA 20	LYS 88
S	PRO 2	ARG 81
T	ARG 8	ALA 106
U	LYS 3	ALA 290
V	GLY 2	LYS 25
W	ILE 32	PHE 292

There are113 helices in PDB entry 7V2M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	9	14	Right-handed alpha
Helix 2	AA2	B	25	30	Right-handed 310
Helix 3	AA3	B	43	65	Right-handed alpha
Helix 4	AA4	B	76	87	Right-handed alpha
Helix 5	AA5	B	104	122	Right-handed alpha
Helix 6	AA6	B	131	150	Right-handed alpha
Helix 7	AA7	B	151	155	Right-handed 310
Helix 8	AA8	B	170	180	Right-handed alpha
Helix 9	AA9	B	207	225	Right-handed alpha
Helix 10	AB1	C	8	12	Right-handed 310
Helix 11	AB2	C	25	28	Right-handed 310
Helix 12	AB3	C	29	47	Right-handed alpha
Helix 13	AB4	C	48	50	Right-handed 310
Helix 14	AB5	C	72	78	Right-handed alpha
Helix 15	AB6	C	79	81	Right-handed 310
Helix 16	AB7	C	82	95	Right-handed alpha
Helix 17	AB8	C	108	111	Right-handed 310
Helix 18	AB9	C	112	126	Right-handed alpha
Helix 19	AC1	C	129	144	Right-handed alpha
Helix 20	AC2	C	156	160	Right-handed 310
Helix 21	AC3	D	8	16	Right-handed alpha
Helix 22	AC4	D	52	69	Right-handed alpha
Helix 23	AC5	D	71	85	Right-handed alpha
Helix 24	AC6	D	88	98	Right-handed alpha
Helix 25	AC7	D	100	109	Right-handed alpha
Helix 26	AC8	D	113	123	Right-handed alpha
Helix 27	AC9	D	150	154	Right-handed 310
Helix 28	AD1	D	155	164	Right-handed alpha
Helix 29	AD2	D	200	209	Right-handed alpha
Helix 30	AD3	E	50	65	Right-handed alpha
Helix 31	AD4	E	103	112	Right-handed alpha
Helix 32	AD5	E	127	141	Right-handed alpha
Helix 33	AD6	E	144	153	Right-handed alpha
Helix 34	AD7	F	15	33	Right-handed alpha
Helix 35	AD8	F	71	79	Right-handed alpha
Helix 36	AD9	G	20	31	Right-handed alpha
Helix 37	AE1	G	35	54	Right-handed alpha
Helix 38	AE2	G	57	68	Right-handed alpha
Helix 39	AE3	G	92	109	Right-handed alpha
Helix 40	AE4	G	115	130	Right-handed alpha
Helix 41	AE5	G	132	145	Right-handed alpha
Helix 42	AE6	G	148	154	Right-handed 310
Helix 43	AE7	H	4	18	Right-handed alpha
Helix 44	AE8	H	29	42	Right-handed alpha
Helix 45	AE9	H	96	100	Right-handed 310
Helix 46	AF1	H	103	107	Right-handed 310
Helix 47	AF2	H	121	128	Right-handed alpha
Helix 48	AF3	I	33	37	Right-handed alpha
Helix 49	AF4	I	42	46	Right-handed 310
Helix 50	AF5	I	47	53	Right-handed alpha
Helix 51	AF6	I	69	89	Right-handed alpha
Helix 52	AF7	I	92	97	Right-handed alpha
Helix 53	AF8	J	12	30	Right-handed alpha
Helix 54	AF9	J	78	85	Right-handed alpha
Helix 55	AG1	K	45	49	Right-handed alpha
Helix 56	AG2	K	51	56	Right-handed 310
Helix 57	AG3	K	57	74	Right-handed alpha
Helix 58	AG4	K	90	100	Right-handed alpha
Helix 59	AG5	L	3	10	Right-handed alpha
Helix 60	AG6	L	21	25	Right-handed 310
Helix 61	AG7	M	14	19	Right-handed alpha
Helix 62	AG8	M	26	38	Right-handed alpha
Helix 63	AG9	M	44	48	Right-handed 310
Helix 64	AH1	M	49	62	Right-handed alpha
Helix 65	AH2	M	66	84	Right-handed alpha
Helix 66	AH3	M	86	95	Right-handed alpha
Helix 67	AH4	M	107	112	Right-handed alpha
Helix 68	AH5	N	3	10	Right-handed alpha
Helix 69	AH6	N	40	51	Right-handed alpha
Helix 70	AH7	O	4	16	Right-handed alpha
Helix 71	AH8	O	24	46	Right-handed alpha
Helix 72	AH9	O	49	74	Right-handed alpha
Helix 73	AI1	O	74	86	Right-handed alpha
Helix 74	AI2	P	52	63	Right-handed alpha
Helix 75	AI3	P	67	77	Right-handed alpha
Helix 76	AI4	Q	81	94	Right-handed alpha
Helix 77	AI5	Q	95	99	Right-handed 310
Helix 78	AI6	R	36	42	Right-handed alpha
Helix 79	AI7	R	52	57	Right-handed alpha
Helix 80	AI8	R	59	77	Right-handed alpha
Helix 81	AI9	S	12	24	Right-handed alpha
Helix 82	AJ1	S	64	69	Right-handed 310
Helix 83	AJ2	S	70	75	Right-handed 310
Helix 84	AJ3	T	13	47	Right-handed alpha
Helix 85	AJ4	T	48	69	Right-handed alpha
Helix 86	AJ5	T	73	93	Right-handed alpha
Helix 87	AJ6	U	9	15	Right-handed alpha
Helix 88	AJ7	U	33	45	Right-handed alpha
Helix 89	AJ8	U	60	69	Right-handed alpha
Helix 90	AJ9	U	82	87	Right-handed alpha
Helix 91	AK1	U	88	90	Right-handed 310
Helix 92	AK2	U	108	116	Right-handed alpha
Helix 93	AK3	U	129	143	Right-handed alpha
Helix 94	AK4	U	156	163	Right-handed alpha
Helix 95	AK5	U	172	181	Right-handed alpha
Helix 96	AK6	U	191	195	Right-handed 310
Helix 97	AK7	U	220	232	Right-handed alpha
Helix 98	AK8	U	238	245	Right-handed alpha
Helix 99	AK9	U	247	253	Right-handed alpha
Helix 100	AL1	U	253	261	Right-handed alpha
Helix 101	AL2	U	276	290	Right-handed alpha
Helix 102	AL3	V	8	16	Right-handed alpha
Helix 103	AL4	W	35	45	Right-handed alpha
Helix 104	AL5	W	60	68	Right-handed alpha
Helix 105	AL6	W	82	90	Right-handed alpha
Helix 106	AL7	W	107	116	Right-handed alpha
Helix 107	AL8	W	133	143	Right-handed alpha
Helix 108	AL9	W	156	163	Right-handed alpha
Helix 109	AM1	W	172	181	Right-handed alpha
Helix 110	AM2	W	220	232	Right-handed alpha
Helix 111	AM3	W	238	245	Right-handed alpha
Helix 112	AM4	W	253	264	Right-handed alpha
Helix 113	AM5	W	276	290	Right-handed alpha

There are 24 sheets in PDB entry 7V2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	20	first strand
Strand 2	B	39	42	anti-parallel
Strand 3	B	32	36	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	68	71	parallel
Strand 3	B	161	164	parallel
Strand 4	B	184	186	parallel
Strand 5	B	199	200	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	52	58	parallel
Strand 3	C	67	70	anti-parallel
Strand 4	C	102	105	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	148	153	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	182	191	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	126	128	anti-parallel
Strand 3	D	144	148	anti-parallel
Strand 4	D	182	185	anti-parallel
Strand 5	D	174	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	20	first strand
Strand 2	E	23	35	anti-parallel
Strand 3	E	40	48	anti-parallel
Strand 4	E	66	68	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	84	first strand
Strand 2	E	87	93	anti-parallel
Strand 3	E	117	124	anti-parallel
Strand 4	E	99	101	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	55	67	anti-parallel
Strand 3	F	45	52	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	55	67	anti-parallel
Strand 3	F	2	10	anti-parallel
Strand 4	F	85	92	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	76	first strand
Strand 2	G	87	90	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	27	first strand
Strand 2	H	56	62	anti-parallel
Strand 3	H	47	53	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	95	first strand
Strand 2	H	131	137	anti-parallel
Strand 3	H	109	114	anti-parallel
Strand 4	H	117	120	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	13	21	anti-parallel
Strand 3	I	9	10	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	13	21	anti-parallel
Strand 3	I	59	66	anti-parallel
Strand 4	I	26	28	parallel
Strand 5	I	31	32	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	38	49	first strand
Strand 2	J	61	71	anti-parallel
Strand 3	J	5	10	anti-parallel
Strand 4	J	96	99	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	38	49	first strand
Strand 2	J	61	71	anti-parallel
Strand 3	N	56	58	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	44	first strand
Strand 2	K	28	33	anti-parallel
Strand 3	K	18	23	anti-parallel
Strand 4	K	82	86	parallel
Strand 5	K	108	110	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	40	first strand
Strand 2	L	50	57	anti-parallel
Strand 3	L	62	66	anti-parallel
Strand 4	L	95	97	parallel
Strand 5	L	79	84	anti-parallel
Strand 6	L	29	40	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	2	11	first strand
Strand 2	P	14	23	anti-parallel
Strand 3	P	34	39	anti-parallel
Strand 4	P	49	51	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	15	first strand
Strand 2	Q	18	28	anti-parallel
Strand 3	Q	35	45	anti-parallel
Strand 4	Q	71	79	parallel
Strand 5	Q	55	61	anti-parallel
Strand 6	Q	5	15	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	31	33	first strand
Strand 2	S	48	52	parallel
Strand 3	S	57	61	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	52	55	first strand
Strand 2	U	73	77	parallel
Strand 3	U	96	100	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	123	126	first strand
Strand 2	U	149	155	parallel
Strand 3	U	203	210	anti-parallel
Strand 4	U	182	190	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	96	99	first strand
Strand 2	W	72	76	parallel
Strand 3	W	51	55	parallel
Strand 4	W	122	127	parallel
Strand 5	W	149	155	parallel
Strand 6	W	203	210	anti-parallel
Strand 7	W	182	190	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V2M

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V2M