Analysis of interatomic Contacts of Structural Units in PDB entry:
7V2Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V2Y entry

There are 6 chains in PDB entry 7V2Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLY 602
B	MET 1	GLN 1255
C	GLU 41	LEU 373
D	MET 1	VAL 138
E	GLU 5	ALA 184
F	THR 62	ASN 446

There are130 helices in PDB entry 7V2Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	20	Right-handed alpha
Helix 2	AA2	A	25	32	Right-handed alpha
Helix 3	AA3	A	42	46	Right-handed 310
Helix 4	AA4	A	49	54	Right-handed alpha
Helix 5	AA5	A	60	79	Right-handed alpha
Helix 6	AA6	A	84	106	Right-handed alpha
Helix 7	AA7	A	115	131	Right-handed alpha
Helix 8	AA8	A	134	139	Right-handed alpha
Helix 9	AA9	A	141	147	Right-handed alpha
Helix 10	AB1	A	148	153	Right-handed alpha
Helix 11	AB2	A	177	191	Right-handed alpha
Helix 12	AB3	A	196	212	Right-handed alpha
Helix 13	AB4	A	251	266	Right-handed alpha
Helix 14	AB5	A	270	275	Right-handed alpha
Helix 15	AB6	A	281	296	Right-handed alpha
Helix 16	AB7	A	298	321	Right-handed alpha
Helix 17	AB8	A	342	351	Right-handed alpha
Helix 18	AB9	A	351	360	Right-handed alpha
Helix 19	AC1	A	378	388	Right-handed alpha
Helix 20	AC2	A	395	415	Right-handed alpha
Helix 21	AC3	A	416	422	Right-handed alpha
Helix 22	AC4	A	422	427	Right-handed alpha
Helix 23	AC5	A	444	456	Right-handed alpha
Helix 24	AC6	A	463	468	Right-handed alpha
Helix 25	AC7	A	471	492	Right-handed alpha
Helix 26	AC8	A	525	532	Right-handed alpha
Helix 27	AC9	A	547	565	Right-handed alpha
Helix 28	AD1	A	575	583	Right-handed alpha
Helix 29	AD2	B	2	15	Right-handed alpha
Helix 30	AD3	B	36	50	Right-handed alpha
Helix 31	AD4	B	53	72	Right-handed alpha
Helix 32	AD5	B	86	101	Right-handed alpha
Helix 33	AD6	B	104	115	Right-handed alpha
Helix 34	AD7	B	121	130	Right-handed alpha
Helix 35	AD8	B	135	142	Right-handed alpha
Helix 36	AD9	B	143	147	Right-handed 310
Helix 37	AE1	B	154	162	Right-handed alpha
Helix 38	AE2	B	180	192	Right-handed alpha
Helix 39	AE3	B	202	216	Right-handed alpha
Helix 40	AE4	B	219	231	Right-handed alpha
Helix 41	AE5	B	232	234	Right-handed 310
Helix 42	AE6	B	240	248	Right-handed alpha
Helix 43	AE7	B	273	282	Right-handed alpha
Helix 44	AE8	B	293	307	Right-handed alpha
Helix 45	AE9	B	312	317	Right-handed alpha
Helix 46	AF1	B	322	343	Right-handed alpha
Helix 47	AF2	B	403	415	Right-handed alpha
Helix 48	AF3	B	417	427	Right-handed alpha
Helix 49	AF4	B	428	431	Right-handed 310
Helix 50	AF5	B	434	438	Right-handed 310
Helix 51	AF6	B	439	448	Right-handed alpha
Helix 52	AF7	B	449	457	Right-handed alpha
Helix 53	AF8	B	457	463	Right-handed alpha
Helix 54	AF9	B	463	468	Right-handed alpha
Helix 55	AG1	B	527	532	Right-handed alpha
Helix 56	AG2	B	538	541	Right-handed 310
Helix 57	AG3	B	542	560	Right-handed alpha
Helix 58	AG4	B	567	573	Right-handed alpha
Helix 59	AG5	B	573	581	Right-handed alpha
Helix 60	AG6	B	592	603	Right-handed alpha
Helix 61	AG7	B	610	617	Right-handed alpha
Helix 62	AG8	B	625	640	Right-handed alpha
Helix 63	AG9	B	650	665	Right-handed alpha
Helix 64	AH1	B	670	676	Right-handed alpha
Helix 65	AH2	B	683	691	Right-handed alpha
Helix 66	AH3	B	692	694	Right-handed 310
Helix 67	AH4	B	697	711	Right-handed alpha
Helix 68	AH5	B	731	742	Right-handed alpha
Helix 69	AH6	B	747	758	Right-handed alpha
Helix 70	AH7	B	762	776	Right-handed alpha
Helix 71	AH8	B	786	793	Right-handed alpha
Helix 72	AH9	B	797	807	Right-handed alpha
Helix 73	AI1	B	814	828	Right-handed alpha
Helix 74	AI2	B	830	845	Right-handed alpha
Helix 75	AI3	B	857	877	Right-handed alpha
Helix 76	AI4	B	881	886	Right-handed alpha
Helix 77	AI5	B	888	893	Right-handed alpha
Helix 78	AI6	B	899	916	Right-handed alpha
Helix 79	AI7	B	918	927	Right-handed alpha
Helix 80	AI8	B	941	951	Right-handed alpha
Helix 81	AI9	B	960	974	Right-handed alpha
Helix 82	AJ1	B	979	1019	Right-handed alpha
Helix 83	AJ2	B	1027	1034	Right-handed alpha
Helix 84	AJ3	B	1035	1039	Right-handed 310
Helix 85	AJ4	B	1042	1047	Right-handed alpha
Helix 86	AJ5	B	1047	1052	Right-handed alpha
Helix 87	AJ6	B	1052	1057	Right-handed alpha
Helix 88	AJ7	B	1058	1071	Right-handed alpha
Helix 89	AJ8	B	1074	1079	Right-handed alpha
Helix 90	AJ9	B	1085	1107	Right-handed alpha
Helix 91	AK1	B	1111	1134	Right-handed alpha
Helix 92	AK2	B	1138	1151	Right-handed alpha
Helix 93	AK3	B	1158	1175	Right-handed alpha
Helix 94	AK4	B	1181	1193	Right-handed alpha
Helix 95	AK5	B	1194	1196	Right-handed 310
Helix 96	AK6	B	1211	1232	Right-handed alpha
Helix 97	AK7	B	1241	1255	Right-handed alpha
Helix 98	AK8	C	49	56	Right-handed alpha
Helix 99	AK9	C	202	204	Right-handed 310
Helix 100	AL1	D	4	9	Right-handed alpha
Helix 101	AL2	D	10	15	Right-handed alpha
Helix 102	AL3	D	21	44	Right-handed alpha
Helix 103	AL4	D	58	100	Right-handed alpha
Helix 104	AL5	D	106	138	Right-handed alpha
Helix 105	AL6	E	8	37	Right-handed alpha
Helix 106	AL7	E	45	53	Right-handed alpha
Helix 107	AL8	E	53	84	Right-handed alpha
Helix 108	AL9	E	96	104	Right-handed alpha
Helix 109	AM1	E	104	109	Right-handed alpha
Helix 110	AM2	E	109	119	Right-handed alpha
Helix 111	AM3	E	150	162	Right-handed alpha
Helix 112	AM4	E	168	184	Right-handed alpha
Helix 113	AM5	F	64	68	Right-handed 310
Helix 114	AM6	F	74	81	Right-handed alpha
Helix 115	AM7	F	88	98	Right-handed alpha
Helix 116	AM8	F	112	124	Right-handed alpha
Helix 117	AM9	F	139	151	Right-handed alpha
Helix 118	AN1	F	170	180	Right-handed alpha
Helix 119	AN2	F	181	184	Right-handed 310
Helix 120	AN3	F	191	200	Right-handed alpha
Helix 121	AN4	F	216	222	Right-handed alpha
Helix 122	AN5	F	224	236	Right-handed alpha
Helix 123	AN6	F	254	259	Right-handed alpha
Helix 124	AN7	F	296	302	Right-handed alpha
Helix 125	AN8	F	317	328	Right-handed alpha
Helix 126	AN9	F	341	354	Right-handed alpha
Helix 127	AO1	F	363	368	Right-handed 310
Helix 128	AO2	F	389	394	Right-handed alpha
Helix 129	AO3	F	398	402	Right-handed 310
Helix 130	AO4	F	414	426	Right-handed alpha

There are 14 sheets in PDB entry 7V2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	481	482	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	486	first strand
Strand 2	E	141	143	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	503	506	parallel
Strand 3	B	497	498	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	363	366	anti-parallel
Strand 3	C	353	356	anti-parallel
Strand 4	C	344	346	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	79	80	anti-parallel
Strand 3	C	88	89	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	120	first strand
Strand 2	C	128	132	anti-parallel
Strand 3	C	137	142	anti-parallel
Strand 4	C	149	155	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	178	179	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	183	188	anti-parallel
Strand 3	C	197	200	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	217	first strand
Strand 2	C	223	227	anti-parallel
Strand 3	C	232	238	anti-parallel
Strand 4	C	243	250	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	267	270	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	287	290	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	302	first strand
Strand 2	C	311	314	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	334	336	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	187	190	parallel
Strand 3	F	133	136	parallel
Strand 4	F	211	215	parallel
Strand 5	F	242	247	parallel
Strand 6	F	102	105	parallel
Strand 7	F	266	267	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	333	335	first strand
Strand 2	F	359	362	parallel
Strand 3	F	309	312	parallel
Strand 4	F	377	380	parallel
Strand 5	F	405	410	parallel
Strand 6	F	282	287	parallel
Strand 7	F	431	432	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V2Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V2Y