Analysis of interatomic Contacts of Structural Units in PDB entry:
7V35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V35 entry

There are 7 chains in PDB entry 7V35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	LEU 394
B	GLU 3	ASN 340
C	LYS 14	ARG 62
N	GLN 1	VAL 126
P	HIS 1	HIS 1
P	GLN 3	ASP 28
R	GLN 27	GLY 421

There are 26 helices in PDB entry 7V35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	25	Right-handed alpha
Helix 2	AA2	A	26	40	Right-handed alpha
Helix 3	AA3	A	233	238	Right-handed 310
Helix 4	AA4	A	265	279	Right-handed alpha
Helix 5	AA5	A	332	352	Right-handed alpha
Helix 6	AA6	A	372	391	Right-handed alpha
Helix 7	AA7	B	4	26	Right-handed alpha
Helix 8	AA8	B	33	37	Right-handed 310
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	29	44	Right-handed alpha
Helix 11	AB2	N	87	91	Right-handed 310
Helix 12	AB3	P	2	27	Right-handed alpha
Helix 13	AB4	R	28	50	Right-handed alpha
Helix 14	AB5	R	105	109	Right-handed 310
Helix 15	AB6	R	124	163	Right-handed alpha
Helix 16	AB7	R	171	204	Right-handed alpha
Helix 17	AB8	R	208	217	Right-handed alpha
Helix 18	AB9	R	221	253	Right-handed alpha
Helix 19	AC1	R	263	272	Right-handed alpha
Helix 20	AC2	R	272	290	Right-handed alpha
Helix 21	AC3	R	300	313	Right-handed alpha
Helix 22	AC4	R	315	333	Right-handed alpha
Helix 23	AC5	R	342	359	Right-handed alpha
Helix 24	AC6	R	374	391	Right-handed alpha
Helix 25	AC7	R	391	403	Right-handed alpha
Helix 26	AC8	R	404	421	Right-handed alpha

There are 11 sheets in PDB entry 7V35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	218	222	parallel
Strand 3	A	209	213	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	243	247	parallel
Strand 3	A	286	290	parallel
Strand 4	A	359	360	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	123	125	anti-parallel
Strand 4	B	134	137	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	169	170	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	78	82	anti-parallel
Strand 4	N	69	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	102	anti-parallel
Strand 4	N	32	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	59	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V35

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V35