Analysis of interatomic Contacts of Structural Units in PDB entry:
7V38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V38 entry

There are 2 chains in PDB entry 7V38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 363LEU 569
B
 ALA 363LEU 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 7V38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
366 377Right-handed alpha
Helix 2
AA2
A
419 430Right-handed alpha
Helix 3
AA3
A
434 439Right-handed 310
Helix 4
AA4
A
444 453Right-handed alpha
Helix 5
AA5
A
463 473Right-handed alpha
Helix 6
AA6
A
487 492Right-handed alpha
Helix 7
AA7
A
494 503Right-handed alpha
Helix 8
AA8
A
504 506Right-handed 310
Helix 9
AA9
A
529 541Right-handed alpha
Helix 10
AB1
A
555 560Right-handed alpha
Helix 11
AB2
B
366 377Right-handed alpha
Helix 12
AB3
B
378 380Right-handed 310
Helix 13
AB4
B
419 430Right-handed alpha
Helix 14
AB5
B
434 439Right-handed 310
Helix 15
AB6
B
444 453Right-handed alpha
Helix 16
AB7
B
465 474Right-handed alpha
Helix 17
AB8
B
487 492Right-handed alpha
Helix 18
AB9
B
494 503Right-handed alpha
Helix 19
AC1
B
504 506Right-handed 310
Helix 20
AC2
B
529 543Right-handed alpha
Helix 21
AC3
B
555 560Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7V38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 391first strand
Strand 2
A
399 403anti-parallel
Strand 3
A
409 414anti-parallel
Strand 4
A
551 552parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 461first strand
Strand 2
A
480 483parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 515first strand
Strand 2
A
523 525anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 391first strand
Strand 2
B
399 403anti-parallel
Strand 3
B
409 414anti-parallel
Strand 4
B
551 552parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 462first strand
Strand 2
B
480 484parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il