Analysis of interatomic Contacts of Structural Units in PDB entry:
7V3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V3D entry

There are 2 chains in PDB entry 7V3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LEU 411
B
 VAL 2HIS 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 7V3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
8 25Right-handed alpha
Helix 3
AA3
A
36 44Right-handed alpha
Helix 4
AA4
A
45 50Right-handed 310
Helix 5
AA5
A
66 83Right-handed alpha
Helix 6
AA6
A
93 106Right-handed alpha
Helix 7
AA7
A
122 126Right-handed 310
Helix 8
AA8
A
130 136Right-handed alpha
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
201 207Right-handed alpha
Helix 12
AB3
A
225 229Right-handed 310
Helix 13
AB4
A
240 252Right-handed alpha
Helix 14
AB5
A
260 276Right-handed alpha
Helix 15
AB6
A
276 300Right-handed alpha
Helix 16
AB7
A
307 309Right-handed 310
Helix 17
AB8
A
320 323Right-handed 310
Helix 18
AB9
A
325 336Right-handed alpha
Helix 19
AC1
A
362 368Right-handed alpha
Helix 20
AC2
A
371 388Right-handed alpha
Helix 21
AC3
A
391 409Right-handed alpha
Helix 22
AC4
B
3 8Right-handed alpha
Helix 23
AC5
B
8 25Right-handed alpha
Helix 24
AC6
B
36 44Right-handed alpha
Helix 25
AC7
B
45 50Right-handed 310
Helix 26
AC8
B
64 83Right-handed alpha
Helix 27
AC9
B
93 106Right-handed alpha
Helix 28
AD1
B
122 126Right-handed 310
Helix 29
AD2
B
130 136Right-handed alpha
Helix 30
AD3
B
151 163Right-handed alpha
Helix 31
AD4
B
179 191Right-handed alpha
Helix 32
AD5
B
201 207Right-handed alpha
Helix 33
AD6
B
225 229Right-handed 310
Helix 34
AD7
B
240 252Right-handed alpha
Helix 35
AD8
B
260 276Right-handed alpha
Helix 36
AD9
B
276 300Right-handed alpha
Helix 37
AE1
B
307 309Right-handed 310
Helix 38
AE2
B
320 323Right-handed 310
Helix 39
AE3
B
325 336Right-handed alpha
Helix 40
AE4
B
362 368Right-handed alpha
Helix 41
AE5
B
371 388Right-handed alpha
Helix 42
AE6
B
391 409Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7V3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
338 339parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
193 197parallel
Strand 5
A
166 169parallel
Strand 6
A
111 115parallel
Strand 7
A
137 141parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
357 361anti-parallel
Strand 4
A
341 343anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
338 339parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
219 223anti-parallel
Strand 4
B
193 197parallel
Strand 5
B
166 169parallel
Strand 6
B
111 115parallel
Strand 7
B
137 141parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 305first strand
Strand 2
B
314 318anti-parallel
Strand 3
B
357 361anti-parallel
Strand 4
B
341 343anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il