Analysis of interatomic Contacts of Structural Units in PDB entry:
7V3P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V3P entry

There are 4 chains in PDB entry 7V3P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LYS 897
B	GLU 1	LYS 897
E	GLY 1	ASN 21
F	PHE 1	THR 30

There are 37 helices in PDB entry 7V3P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	20	Right-handed 310
Helix 2	AA2	A	39	43	Right-handed 310
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	A	126	130	Right-handed 310
Helix 5	AA5	A	133	137	Right-handed 310
Helix 6	AA6	A	186	190	Right-handed 310
Helix 7	AA7	A	248	253	Right-handed alpha
Helix 8	AA8	A	313	318	Right-handed alpha
Helix 9	AA9	A	319	321	Right-handed 310
Helix 10	AB1	A	339	349	Right-handed alpha
Helix 11	AB2	A	368	372	Right-handed 310
Helix 12	AB3	A	425	437	Right-handed alpha
Helix 13	AB4	A	443	448	Right-handed alpha
Helix 14	AB5	A	560	564	Right-handed 310
Helix 15	AB6	A	675	697	Right-handed alpha
Helix 16	AB7	A	779	784	Right-handed alpha
Helix 17	AB8	A	852	859	Right-handed alpha
Helix 18	AB9	B	12	21	Right-handed 310
Helix 19	AC1	B	65	69	Right-handed 310
Helix 20	AC2	B	126	130	Right-handed 310
Helix 21	AC3	B	133	137	Right-handed 310
Helix 22	AC4	B	144	148	Right-handed 310
Helix 23	AC5	B	248	254	Right-handed alpha
Helix 24	AC6	B	313	318	Right-handed alpha
Helix 25	AC7	B	319	321	Right-handed 310
Helix 26	AC8	B	339	349	Right-handed alpha
Helix 27	AC9	B	425	436	Right-handed alpha
Helix 28	AD1	B	625	630	Right-handed alpha
Helix 29	AD2	B	631	635	Right-handed 310
Helix 30	AD3	B	676	681	Right-handed alpha
Helix 31	AD4	B	683	687	Right-handed 310
Helix 32	AD5	B	692	697	Right-handed alpha
Helix 33	AD6	B	779	784	Right-handed alpha
Helix 34	AD7	B	852	859	Right-handed alpha
Helix 35	AD8	E	2	7	Right-handed alpha
Helix 36	AD9	E	12	20	Right-handed 310
Helix 37	AE1	F	7	20	Right-handed alpha

There are 38 sheets in PDB entry 7V3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	29	32	parallel
Strand 3	A	55	58	parallel
Strand 4	A	85	90	parallel
Strand 5	A	110	114	parallel
Strand 6	A	138	140	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	50	51	parallel
Strand 3	A	75	76	parallel
Strand 4	A	105	106	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	172	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	180	181	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	199	200	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	209	first strand
Strand 2	A	218	221	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	229	231	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	245	247	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	272	274	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	291	292	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	325	326	parallel
Strand 3	A	353	354	parallel
Strand 4	A	377	378	parallel
Strand 5	A	410	411	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	329	332	parallel
Strand 3	A	358	360	parallel
Strand 4	A	390	393	parallel
Strand 5	A	418	419	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	470	first strand
Strand 2	A	474	479	anti-parallel
Strand 3	A	535	539	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	524	first strand
Strand 2	A	490	499	anti-parallel
Strand 3	A	546	555	anti-parallel
Strand 4	A	567	568	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	524	first strand
Strand 2	A	490	499	anti-parallel
Strand 3	A	546	555	anti-parallel
Strand 4	A	572	575	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	590	first strand
Strand 2	A	597	602	anti-parallel
Strand 3	A	757	760	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	751	first strand
Strand 2	A	611	620	anti-parallel
Strand 3	A	768	777	anti-parallel
Strand 4	A	786	794	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	813	first strand
Strand 2	A	817	821	anti-parallel
Strand 3	A	860	863	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	851	first strand
Strand 2	A	832	840	anti-parallel
Strand 3	A	869	879	anti-parallel
Strand 4	A	882	883	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	851	first strand
Strand 2	A	832	840	anti-parallel
Strand 3	A	869	879	anti-parallel
Strand 4	A	890	894	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	24	25	parallel
Strand 3	B	50	51	parallel
Strand 4	B	75	76	parallel
Strand 5	B	105	106	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	29	32	parallel
Strand 3	B	56	58	parallel
Strand 4	B	85	90	parallel
Strand 5	B	110	114	parallel
Strand 6	B	138	140	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	170	173	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	209	first strand
Strand 2	B	218	221	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	229	231	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	245	247	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	269	first strand
Strand 2	B	272	274	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	292	293	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	311	first strand
Strand 2	B	329	332	parallel
Strand 3	B	358	361	parallel
Strand 4	B	388	393	parallel
Strand 5	B	415	419	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	353	354	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	461	first strand
Strand 2	B	566	567	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	470	first strand
Strand 2	B	474	479	anti-parallel
Strand 3	B	535	539	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	490	499	anti-parallel
Strand 3	B	547	555	anti-parallel
Strand 4	B	572	574	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	590	first strand
Strand 2	B	598	602	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	752	first strand
Strand 2	B	611	620	anti-parallel
Strand 3	B	768	777	anti-parallel
Strand 4	B	789	794	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	813	first strand
Strand 2	B	817	821	anti-parallel
Strand 3	B	860	863	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	851	first strand
Strand 2	B	832	840	anti-parallel
Strand 3	B	869	879	anti-parallel
Strand 4	B	882	883	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	851	first strand
Strand 2	B	832	840	anti-parallel
Strand 3	B	869	879	anti-parallel
Strand 4	B	890	894	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V3P

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V3P