Analysis of interatomic Contacts of Structural Units in PDB entry:
7V4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V4J entry

There are 5 chains in PDB entry 7V4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 352
B	MET 1	ILE 352
C	MET 1	ILE 352
D	MET 1	ILE 352
E	MET 1	ILE 352

There are 36 helices in PDB entry 7V4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	9	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	57	61	Right-handed alpha
Helix 4	AA4	A	107	115	Right-handed alpha
Helix 5	AA5	A	116	122	Right-handed alpha
Helix 6	AA6	A	168	182	Right-handed alpha
Helix 7	AA7	A	207	229	Right-handed alpha
Helix 8	AA8	A	339	352	Right-handed alpha
Helix 9	AA9	B	46	50	Right-handed 310
Helix 10	AB1	B	56	61	Right-handed alpha
Helix 11	AB2	B	107	116	Right-handed alpha
Helix 12	AB3	B	116	123	Right-handed alpha
Helix 13	AB4	B	168	182	Right-handed alpha
Helix 14	AB5	B	207	229	Right-handed alpha
Helix 15	AB6	B	339	352	Right-handed alpha
Helix 16	AB7	C	4	9	Right-handed alpha
Helix 17	AB8	C	46	50	Right-handed 310
Helix 18	AB9	C	56	61	Right-handed alpha
Helix 19	AC1	C	107	115	Right-handed alpha
Helix 20	AC2	C	116	123	Right-handed alpha
Helix 21	AC3	C	168	180	Right-handed alpha
Helix 22	AC4	C	207	229	Right-handed alpha
Helix 23	AC5	C	339	352	Right-handed alpha
Helix 24	AC6	D	56	61	Right-handed alpha
Helix 25	AC7	D	107	116	Right-handed alpha
Helix 26	AC8	D	116	123	Right-handed alpha
Helix 27	AC9	D	168	182	Right-handed alpha
Helix 28	AD1	D	207	229	Right-handed alpha
Helix 29	AD2	D	339	352	Right-handed alpha
Helix 30	AD3	E	46	50	Right-handed 310
Helix 31	AD4	E	56	61	Right-handed alpha
Helix 32	AD5	E	107	115	Right-handed alpha
Helix 33	AD6	E	116	121	Right-handed alpha
Helix 34	AD7	E	168	183	Right-handed alpha
Helix 35	AD8	E	206	229	Right-handed alpha
Helix 36	AD9	E	339	352	Right-handed alpha

There are 15 sheets in PDB entry 7V4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	39	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	88	92	parallel
Strand 4	A	78	79	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	69	72	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	100	101	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	198	201	anti-parallel
Strand 3	A	125	132	anti-parallel
Strand 4	A	249	253	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	21	26	anti-parallel
Strand 3	B	88	91	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	129	134	anti-parallel
Strand 4	B	232	233	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	129	134	anti-parallel
Strand 4	B	248	249	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	38	first strand
Strand 2	C	21	26	anti-parallel
Strand 3	C	88	91	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	94	96	anti-parallel
Strand 3	C	100	101	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	191	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	248	249	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	21	26	anti-parallel
Strand 3	D	88	91	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	190	first strand
Strand 2	D	197	201	anti-parallel
Strand 3	D	129	133	anti-parallel
Strand 4	D	248	249	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	38	first strand
Strand 2	E	21	26	anti-parallel
Strand 3	E	88	91	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	E	93	94	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	191	first strand
Strand 2	E	197	201	anti-parallel
Strand 3	E	128	133	anti-parallel
Strand 4	E	248	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V4J