Analysis of interatomic Contacts of Structural Units in PDB entry:
7V4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V4Y entry

There are 2 chains in PDB entry 7V4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLU 401
A
 HIS 0PRO 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7V4Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
32 36Right-handed 310
Helix 2
AA2
B
42 52Right-handed alpha
Helix 3
AA3
B
60 70Right-handed alpha
Helix 4
AA4
B
90 92Right-handed 310
Helix 5
AA5
B
93 107Right-handed alpha
Helix 6
AA6
B
111 113Right-handed 310
Helix 7
AA7
B
114 129Right-handed alpha
Helix 8
AA8
B
132 146Right-handed alpha
Helix 9
AA9
B
148 152Right-handed 310
Helix 10
AB1
B
157 164Right-handed alpha
Helix 11
AB2
B
165 177Right-handed alpha
Helix 12
AB3
B
191 199Right-handed alpha
Helix 13
AB4
B
200 203Right-handed 310
Helix 14
AB5
B
247 260Right-handed alpha
Helix 15
AB6
B
264 271Right-handed alpha
Helix 16
AB7
B
303 318Right-handed alpha
Helix 17
AB8
B
319 321Right-handed 310
Helix 18
AB9
B
323 343Right-handed alpha
Helix 19
AC1
B
344 360Right-handed alpha
Helix 20
AC2
B
364 374Right-handed alpha
Helix 21
AC3
B
376 387Right-handed alpha
Helix 22
AC4
A
33 37Right-handed 310
Helix 23
AC5
A
38 42Right-handed 310
Helix 24
AC6
A
43 53Right-handed alpha
Helix 25
AC7
A
60 71Right-handed alpha
Helix 26
AC8
A
91 93Right-handed 310
Helix 27
AC9
A
94 106Right-handed alpha
Helix 28
AD1
A
111 131Right-handed alpha
Helix 29
AD2
A
134 147Right-handed alpha
Helix 30
AD3
A
149 153Right-handed 310
Helix 31
AD4
A
158 165Right-handed alpha
Helix 32
AD5
A
166 178Right-handed alpha
Helix 33
AD6
A
179 181Right-handed 310
Helix 34
AD7
A
192 205Right-handed alpha
Helix 35
AD8
A
251 264Right-handed alpha
Helix 36
AD9
A
268 274Right-handed alpha
Helix 37
AE1
A
306 325Right-handed alpha
Helix 38
AE2
A
327 346Right-handed alpha
Helix 39
AE3
A
348 364Right-handed alpha
Helix 40
AE4
A
368 378Right-handed alpha
Helix 41
AE5
A
380 389Right-handed alpha
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There are 5 sheets in PDB entry 7V4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
12 17anti-parallel
Strand 3
B
183 188parallel
Strand 4
B
23 29anti-parallel
Strand 5
B
83 89anti-parallel
Strand 6
B
73 78anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
58 59anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 226first strand
Strand 2
B
393 398parallel
Strand 3
B
232 240anti-parallel
Strand 4
B
291 299anti-parallel
Strand 5
B
277 284anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
12 17anti-parallel
Strand 3
A
183 189parallel
Strand 4
A
24 30anti-parallel
Strand 5
A
84 90anti-parallel
Strand 6
A
74 79anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 229first strand
Strand 2
A
397 402parallel
Strand 3
A
236 243anti-parallel
Strand 4
A
294 302anti-parallel
Strand 5
A
280 289anti-parallel
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