Analysis of interatomic Contacts of Structural Units in PDB entry:
7V55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V55 entry

There is 1 chain in PDB entry 7V55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39ALA 1074
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 7V55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 69Right-handed alpha
Helix 2
AA2
A
93 105Right-handed alpha
Helix 3
AA3
A
127 138Right-handed alpha
Helix 4
AA4
A
157 164Right-handed 310
Helix 5
AA5
A
198 202Right-handed 310
Helix 6
AA6
A
203 207Right-handed 310
Helix 7
AA7
A
476 494Right-handed alpha
Helix 8
AA8
A
500 520Right-handed alpha
Helix 9
AA9
A
575 589Right-handed alpha
Helix 10
AB1
A
607 618Right-handed alpha
Helix 11
AB2
A
647 655Right-handed alpha
Helix 12
AB3
A
656 659Right-handed 310
Helix 13
AB4
A
660 667Right-handed alpha
Helix 14
AB5
A
668 676Right-handed alpha
Helix 15
AB6
A
682 692Right-handed alpha
Helix 16
AB7
A
694 720Right-handed alpha
Helix 17
AB8
A
730 746Right-handed alpha
Helix 18
AB9
A
765 780Right-handed alpha
Helix 19
AC1
A
785 799Right-handed alpha
Helix 20
AC2
A
804 812Right-handed alpha
Helix 21
AC3
A
821 826Right-handed 310
Helix 22
AC4
A
827 830Right-handed 310
Helix 23
AC5
A
874 879Right-handed alpha
Helix 24
AC6
A
910 924Right-handed alpha
Helix 25
AC7
A
937 941Right-handed 310
Helix 26
AC8
A
949 971Right-handed alpha
Helix 27
AC9
A
1012 1015Right-handed 310
Helix 28
AD1
A
1026 1030Right-handed 310
Helix 29
AD2
A
1069 1074Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7V55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
109 114parallel
Strand 3
A
74 79parallel
Strand 4
A
170 173anti-parallel
Strand 5
A
177 181anti-parallel
Strand 6
A
469 473anti-parallel
Strand 7
A
46 54anti-parallel
Strand 8
A
566 574anti-parallel
Strand 9
A
885 892anti-parallel
Strand 10
A
865 869anti-parallel
Strand 11
A
857 861anti-parallel
Strand 12
A
622 627anti-parallel
Strand 13
A
750 755parallel
Strand 14
A
832 843parallel
Strand 15
A
846 851anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 606first strand
Strand 2
A
566 574anti-parallel
Strand 3
A
885 892anti-parallel
Strand 4
A
865 869anti-parallel
Strand 5
A
857 861anti-parallel
Strand 6
A
622 627anti-parallel
Strand 7
A
750 755parallel
Strand 8
A
832 843parallel
Strand 9
A
1051 1053anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
454 455anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
A
853 854parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
906 909anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1005 1007first strand
Strand 2
A
1017 1019anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il