Analysis of interatomic Contacts of Structural Units in PDB entry:
7V5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V5D entry

There are 2 chains in PDB entry 7V5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 169MET 738
B
 THR 169MET 738
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7V5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 176Right-handed alpha
Helix 2
AA2
A
177 179Right-handed 310
Helix 3
AA3
A
180 214Right-handed alpha
Helix 4
AA4
A
219 229Right-handed alpha
Helix 5
AA5
A
229 264Right-handed alpha
Helix 6
AA6
A
270 276Right-handed alpha
Helix 7
AA7
A
279 321Right-handed alpha
Helix 8
AA8
A
321 369Right-handed alpha
Helix 9
AA9
A
370 376Right-handed alpha
Helix 10
AB1
A
380 433Right-handed alpha
Helix 11
AB2
A
437 472Right-handed alpha
Helix 12
AB3
A
472 480Right-handed alpha
Helix 13
AB4
A
543 549Right-handed alpha
Helix 14
AB5
A
567 569Right-handed 310
Helix 15
AB6
A
570 578Right-handed alpha
Helix 16
AB7
A
594 598Right-handed 310
Helix 17
AB8
A
604 614Right-handed alpha
Helix 18
AB9
A
618 623Right-handed alpha
Helix 19
AC1
A
632 637Right-handed alpha
Helix 20
AC2
A
640 652Right-handed alpha
Helix 21
AC3
A
672 679Right-handed alpha
Helix 22
AC4
A
698 702Right-handed 310
Helix 23
AC5
A
719 726Right-handed alpha
Helix 24
AC6
A
732 737Right-handed alpha
Helix 25
AC7
B
170 174Right-handed alpha
Helix 26
AC8
B
177 179Right-handed 310
Helix 27
AC9
B
180 214Right-handed alpha
Helix 28
AD1
B
219 229Right-handed alpha
Helix 29
AD2
B
229 264Right-handed alpha
Helix 30
AD3
B
270 276Right-handed alpha
Helix 31
AD4
B
279 298Right-handed alpha
Helix 32
AD5
B
298 321Right-handed alpha
Helix 33
AD6
B
321 370Right-handed alpha
Helix 34
AD7
B
370 378Right-handed alpha
Helix 35
AD8
B
380 434Right-handed alpha
Helix 36
AD9
B
437 472Right-handed alpha
Helix 37
AE1
B
474 479Right-handed alpha
Helix 38
AE2
B
541 549Right-handed alpha
Helix 39
AE3
B
570 578Right-handed alpha
Helix 40
AE4
B
591 596Right-handed alpha
Helix 41
AE5
B
604 614Right-handed alpha
Helix 42
AE6
B
617 622Right-handed alpha
Helix 43
AE7
B
632 637Right-handed alpha
Helix 44
AE8
B
640 654Right-handed alpha
Helix 45
AE9
B
672 679Right-handed alpha
Helix 46
AF1
B
696 700Right-handed 310
Helix 47
AF2
B
719 726Right-handed alpha
Helix 48
AF3
B
730 738Right-handed alpha
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There are 4 sheets in PDB entry 7V5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 524first strand
Strand 2
A
500 503anti-parallel
Strand 3
A
560 561anti-parallel
Strand 4
A
564 565anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 660first strand
Strand 2
A
689 693parallel
Strand 3
A
531 533parallel
Strand 4
A
706 710parallel
Strand 5
A
713 716anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 521first strand
Strand 2
B
500 507anti-parallel
Strand 3
B
556 561anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
659 663first strand
Strand 2
B
689 693parallel
Strand 3
B
531 534parallel
Strand 4
B
707 710parallel
Strand 5
B
713 716anti-parallel
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