Analysis of interatomic Contacts of Structural Units in PDB entry:
7V5L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V5L entry

There are 4 chains in PDB entry 7V5L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	ALA 454
B	SER 3	ALA 454
C	SER 3	ALA 454
D	SER 3	ALA 454

There are 86 helices in PDB entry 7V5L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	20	Right-handed alpha
Helix 2	AA2	A	21	32	Right-handed alpha
Helix 3	AA3	A	35	41	Right-handed alpha
Helix 4	AA4	A	42	48	Right-handed alpha
Helix 5	AA5	A	72	91	Right-handed alpha
Helix 6	AA6	A	98	124	Right-handed alpha
Helix 7	AA7	A	130	139	Right-handed alpha
Helix 8	AA8	A	146	158	Right-handed alpha
Helix 9	AA9	A	161	165	Right-handed 310
Helix 10	AB1	A	174	198	Right-handed alpha
Helix 11	AB2	A	201	225	Right-handed alpha
Helix 12	AB3	A	249	258	Right-handed alpha
Helix 13	AB4	A	263	265	Right-handed 310
Helix 14	AB5	A	304	318	Right-handed alpha
Helix 15	AB6	A	345	351	Right-handed alpha
Helix 16	AB7	A	358	365	Right-handed alpha
Helix 17	AB8	A	412	418	Right-handed alpha
Helix 18	AB9	A	427	429	Right-handed 310
Helix 19	AC1	A	430	435	Right-handed alpha
Helix 20	AC2	A	436	439	Right-handed 310
Helix 21	AC3	A	448	452	Right-handed 310
Helix 22	AC4	B	7	20	Right-handed alpha
Helix 23	AC5	B	21	32	Right-handed alpha
Helix 24	AC6	B	35	41	Right-handed alpha
Helix 25	AC7	B	42	49	Right-handed alpha
Helix 26	AC8	B	72	91	Right-handed alpha
Helix 27	AC9	B	98	124	Right-handed alpha
Helix 28	AD1	B	130	139	Right-handed alpha
Helix 29	AD2	B	146	158	Right-handed alpha
Helix 30	AD3	B	161	165	Right-handed 310
Helix 31	AD4	B	174	198	Right-handed alpha
Helix 32	AD5	B	201	225	Right-handed alpha
Helix 33	AD6	B	249	258	Right-handed alpha
Helix 34	AD7	B	263	265	Right-handed 310
Helix 35	AD8	B	304	318	Right-handed alpha
Helix 36	AD9	B	345	351	Right-handed alpha
Helix 37	AE1	B	358	365	Right-handed alpha
Helix 38	AE2	B	412	418	Right-handed alpha
Helix 39	AE3	B	427	429	Right-handed 310
Helix 40	AE4	B	430	435	Right-handed alpha
Helix 41	AE5	B	436	439	Right-handed 310
Helix 42	AE6	B	448	452	Right-handed 310
Helix 43	AE7	C	7	20	Right-handed alpha
Helix 44	AE8	C	21	32	Right-handed alpha
Helix 45	AE9	C	35	41	Right-handed alpha
Helix 46	AF1	C	42	49	Right-handed alpha
Helix 47	AF2	C	72	91	Right-handed alpha
Helix 48	AF3	C	98	124	Right-handed alpha
Helix 49	AF4	C	130	139	Right-handed alpha
Helix 50	AF5	C	146	158	Right-handed alpha
Helix 51	AF6	C	161	165	Right-handed 310
Helix 52	AF7	C	169	173	Right-handed 310
Helix 53	AF8	C	174	198	Right-handed alpha
Helix 54	AF9	C	201	225	Right-handed alpha
Helix 55	AG1	C	249	258	Right-handed alpha
Helix 56	AG2	C	263	265	Right-handed 310
Helix 57	AG3	C	304	318	Right-handed alpha
Helix 58	AG4	C	345	351	Right-handed alpha
Helix 59	AG5	C	358	365	Right-handed alpha
Helix 60	AG6	C	412	418	Right-handed alpha
Helix 61	AG7	C	427	429	Right-handed 310
Helix 62	AG8	C	430	436	Right-handed alpha
Helix 63	AG9	C	437	439	Right-handed 310
Helix 64	AH1	C	448	452	Right-handed 310
Helix 65	AH2	D	7	20	Right-handed alpha
Helix 66	AH3	D	21	32	Right-handed alpha
Helix 67	AH4	D	35	41	Right-handed alpha
Helix 68	AH5	D	42	49	Right-handed alpha
Helix 69	AH6	D	72	91	Right-handed alpha
Helix 70	AH7	D	98	124	Right-handed alpha
Helix 71	AH8	D	130	139	Right-handed alpha
Helix 72	AH9	D	146	158	Right-handed alpha
Helix 73	AI1	D	161	165	Right-handed 310
Helix 74	AI2	D	169	173	Right-handed 310
Helix 75	AI3	D	174	198	Right-handed alpha
Helix 76	AI4	D	201	225	Right-handed alpha
Helix 77	AI5	D	249	258	Right-handed alpha
Helix 78	AI6	D	263	265	Right-handed 310
Helix 79	AI7	D	304	318	Right-handed alpha
Helix 80	AI8	D	345	351	Right-handed alpha
Helix 81	AI9	D	358	365	Right-handed alpha
Helix 82	AJ1	D	412	418	Right-handed alpha
Helix 83	AJ2	D	427	429	Right-handed 310
Helix 84	AJ3	D	430	436	Right-handed alpha
Helix 85	AJ4	D	437	439	Right-handed 310
Helix 86	AJ5	D	448	452	Right-handed 310

There are 12 sheets in PDB entry 7V5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	372	381	anti-parallel
Strand 3	A	389	395	anti-parallel
Strand 4	A	407	411	anti-parallel
Strand 5	A	338	339	parallel
Strand 6	A	332	333	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	372	381	anti-parallel
Strand 3	A	322	326	anti-parallel
Strand 4	A	419	425	anti-parallel
Strand 5	A	267	271	anti-parallel
Strand 6	A	300	302	parallel
Strand 7	A	282	286	anti-parallel
Strand 8	A	442	444	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	236	first strand
Strand 2	A	242	248	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	372	381	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	407	411	anti-parallel
Strand 5	B	338	339	parallel
Strand 6	B	332	333	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	372	381	anti-parallel
Strand 3	B	322	326	anti-parallel
Strand 4	B	419	425	anti-parallel
Strand 5	B	267	271	anti-parallel
Strand 6	B	299	302	parallel
Strand 7	B	282	286	anti-parallel
Strand 8	B	442	444	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	236	first strand
Strand 2	B	242	248	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	372	381	anti-parallel
Strand 3	C	389	395	anti-parallel
Strand 4	C	407	411	anti-parallel
Strand 5	C	338	339	parallel
Strand 6	C	332	333	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	372	381	anti-parallel
Strand 3	C	322	326	anti-parallel
Strand 4	C	419	425	anti-parallel
Strand 5	C	267	271	anti-parallel
Strand 6	C	299	302	parallel
Strand 7	C	282	286	anti-parallel
Strand 8	C	442	444	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	236	first strand
Strand 2	C	242	248	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	372	381	anti-parallel
Strand 3	D	389	395	anti-parallel
Strand 4	D	407	411	anti-parallel
Strand 5	D	338	339	parallel
Strand 6	D	332	333	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	372	381	anti-parallel
Strand 3	D	322	326	anti-parallel
Strand 4	D	419	425	anti-parallel
Strand 5	D	267	271	anti-parallel
Strand 6	D	299	302	parallel
Strand 7	D	282	286	anti-parallel
Strand 8	D	442	444	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	236	first strand
Strand 2	D	242	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V5L

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V5L