Analysis of interatomic Contacts of Structural Units in PDB entry:
7V62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V62 entry

There are 4 chains in PDB entry 7V62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 404	PHE 807
B	PRO 405	PHE 807
C	PRO 405	ILE 806
D	PRO 405	THR 486

There are 56 helices in PDB entry 7V62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	418	424	Right-handed alpha
Helix 2	AA2	A	430	434	Right-handed 310
Helix 3	AA3	A	437	439	Right-handed 310
Helix 4	AA4	A	446	452	Right-handed alpha
Helix 5	AA5	A	453	456	Right-handed 310
Helix 6	AA6	A	457	464	Right-handed alpha
Helix 7	AA7	A	468	483	Right-handed alpha
Helix 8	AA8	A	484	486	Right-handed 310
Helix 9	AA9	A	689	693	Right-handed 310
Helix 10	AB1	A	697	702	Right-handed alpha
Helix 11	AB2	A	703	705	Right-handed 310
Helix 12	AB3	A	714	717	Right-handed 310
Helix 13	AB4	A	718	726	Right-handed alpha
Helix 14	AB5	A	728	761	Right-handed alpha
Helix 15	AB6	A	790	798	Right-handed alpha
Helix 16	AB7	B	418	424	Right-handed alpha
Helix 17	AB8	B	430	434	Right-handed 310
Helix 18	AB9	B	446	452	Right-handed alpha
Helix 19	AC1	B	453	456	Right-handed 310
Helix 20	AC2	B	457	464	Right-handed alpha
Helix 21	AC3	B	468	483	Right-handed alpha
Helix 22	AC4	B	484	487	Right-handed 310
Helix 23	AC5	B	689	693	Right-handed 310
Helix 24	AC6	B	697	702	Right-handed alpha
Helix 25	AC7	B	714	717	Right-handed 310
Helix 26	AC8	B	718	726	Right-handed alpha
Helix 27	AC9	B	730	761	Right-handed alpha
Helix 28	AD1	B	790	798	Right-handed alpha
Helix 29	AD2	C	418	424	Right-handed alpha
Helix 30	AD3	C	430	434	Right-handed 310
Helix 31	AD4	C	437	439	Right-handed 310
Helix 32	AD5	C	446	452	Right-handed alpha
Helix 33	AD6	C	453	456	Right-handed 310
Helix 34	AD7	C	457	464	Right-handed alpha
Helix 35	AD8	C	468	483	Right-handed alpha
Helix 36	AD9	C	484	489	Right-handed 310
Helix 37	AE1	C	673	675	Right-handed 310
Helix 38	AE2	C	697	702	Right-handed alpha
Helix 39	AE3	C	714	717	Right-handed 310
Helix 40	AE4	C	718	726	Right-handed alpha
Helix 41	AE5	C	728	761	Right-handed alpha
Helix 42	AE6	C	790	798	Right-handed alpha
Helix 43	AE7	D	418	423	Right-handed alpha
Helix 44	AE8	D	430	434	Right-handed 310
Helix 45	AE9	D	446	452	Right-handed alpha
Helix 46	AF1	D	453	456	Right-handed 310
Helix 47	AF2	D	457	464	Right-handed alpha
Helix 48	AF3	D	468	483	Right-handed alpha
Helix 49	AF4	D	484	489	Right-handed 310
Helix 50	AF5	D	689	693	Right-handed 310
Helix 51	AF6	D	697	702	Right-handed alpha
Helix 52	AF7	D	703	705	Right-handed 310
Helix 53	AF8	D	714	717	Right-handed 310
Helix 54	AF9	D	718	726	Right-handed alpha
Helix 55	AG1	D	728	761	Right-handed alpha
Helix 56	AG2	D	790	798	Right-handed alpha

There are 16 sheets in PDB entry 7V62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	445	first strand
Strand 2	A	493	495	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	507	first strand
Strand 2	A	513	521	anti-parallel
Strand 3	A	526	533	anti-parallel
Strand 4	A	537	549	anti-parallel
Strand 5	A	553	559	anti-parallel
Strand 6	A	579	583	anti-parallel
Strand 7	A	591	602	anti-parallel
Strand 8	A	608	613	anti-parallel
Strand 9	A	626	632	anti-parallel
Strand 10	A	638	645	anti-parallel
Strand 11	A	649	654	anti-parallel
Strand 12	A	677	682	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	507	first strand
Strand 2	A	513	521	anti-parallel
Strand 3	A	526	533	anti-parallel
Strand 4	A	537	549	anti-parallel
Strand 5	A	561	566	anti-parallel
Strand 6	A	572	576	anti-parallel
Strand 7	A	591	602	anti-parallel
Strand 8	A	608	613	anti-parallel
Strand 9	A	626	632	anti-parallel
Strand 10	A	638	645	anti-parallel
Strand 11	A	649	654	anti-parallel
Strand 12	A	677	682	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	772	776	first strand
Strand 2	A	783	787	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	445	first strand
Strand 2	B	493	495	parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	507	first strand
Strand 2	B	513	521	anti-parallel
Strand 3	B	526	533	anti-parallel
Strand 4	B	537	549	anti-parallel
Strand 5	B	553	566	anti-parallel
Strand 6	B	572	576	anti-parallel
Strand 7	B	591	602	anti-parallel
Strand 8	B	608	613	anti-parallel
Strand 9	B	626	632	anti-parallel
Strand 10	B	640	645	anti-parallel
Strand 11	B	649	654	anti-parallel
Strand 12	B	681	682	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	507	first strand
Strand 2	B	513	521	anti-parallel
Strand 3	B	526	533	anti-parallel
Strand 4	B	537	549	anti-parallel
Strand 5	B	553	566	anti-parallel
Strand 6	B	579	583	anti-parallel
Strand 7	B	591	602	anti-parallel
Strand 8	B	608	613	anti-parallel
Strand 9	B	626	632	anti-parallel
Strand 10	B	640	645	anti-parallel
Strand 11	B	649	654	anti-parallel
Strand 12	B	681	682	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	772	776	first strand
Strand 2	B	783	787	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	445	first strand
Strand 2	C	493	495	parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	507	first strand
Strand 2	C	513	521	anti-parallel
Strand 3	C	526	533	anti-parallel
Strand 4	C	538	549	anti-parallel
Strand 5	C	553	559	anti-parallel
Strand 6	C	579	583	anti-parallel
Strand 7	C	591	602	anti-parallel
Strand 8	C	608	613	anti-parallel
Strand 9	C	626	632	anti-parallel
Strand 10	C	638	645	anti-parallel
Strand 11	C	649	654	anti-parallel
Strand 12	C	677	682	anti-parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	507	first strand
Strand 2	C	513	521	anti-parallel
Strand 3	C	526	533	anti-parallel
Strand 4	C	538	549	anti-parallel
Strand 5	C	561	566	anti-parallel
Strand 6	C	571	576	anti-parallel
Strand 7	C	591	602	anti-parallel
Strand 8	C	608	613	anti-parallel
Strand 9	C	626	632	anti-parallel
Strand 10	C	638	645	anti-parallel
Strand 11	C	649	654	anti-parallel
Strand 12	C	677	682	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	772	776	first strand
Strand 2	C	783	787	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	445	first strand
Strand 2	D	493	495	parallel

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There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	502	507	first strand
Strand 2	D	513	521	anti-parallel
Strand 3	D	526	533	anti-parallel
Strand 4	D	537	549	anti-parallel
Strand 5	D	553	559	anti-parallel
Strand 6	D	579	583	anti-parallel
Strand 7	D	591	602	anti-parallel
Strand 8	D	608	613	anti-parallel
Strand 9	D	626	632	anti-parallel
Strand 10	D	640	645	anti-parallel
Strand 11	D	649	654	anti-parallel
Strand 12	D	681	682	anti-parallel

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There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	502	507	first strand
Strand 2	D	513	521	anti-parallel
Strand 3	D	526	533	anti-parallel
Strand 4	D	537	549	anti-parallel
Strand 5	D	561	566	anti-parallel
Strand 6	D	572	576	anti-parallel
Strand 7	D	591	602	anti-parallel
Strand 8	D	608	613	anti-parallel
Strand 9	D	626	632	anti-parallel
Strand 10	D	640	645	anti-parallel
Strand 11	D	649	654	anti-parallel
Strand 12	D	681	682	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	772	776	first strand
Strand 2	D	783	787	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V62

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V62