Analysis of interatomic Contacts of Structural Units in PDB entry:
7V69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V69 entry

There are 5 chains in PDB entry 7V69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	GLU 3	ASN 340
C	ALA 7	GLU 63
S	VAL 2	LEU 235
R	THR 29	GLN 471

There are 32 helices in PDB entry 7V69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	200	204	Right-handed 310
Helix 4	AA4	A	207	216	Right-handed 310
Helix 5	AA5	A	242	254	Right-handed alpha
Helix 6	AA6	A	270	281	Right-handed alpha
Helix 7	AA7	A	282	286	Right-handed 310
Helix 8	AA8	A	295	309	Right-handed alpha
Helix 9	AA9	A	330	351	Right-handed alpha
Helix 10	AB1	B	4	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	280	282	Right-handed 310
Helix 13	AB4	C	9	24	Right-handed alpha
Helix 14	AB5	C	29	34	Right-handed alpha
Helix 15	AB6	C	34	43	Right-handed alpha
Helix 16	AB7	S	28	32	Right-handed 310
Helix 17	AB8	S	53	56	Right-handed 310
Helix 18	AB9	S	87	91	Right-handed 310
Helix 19	AC1	R	30	60	Right-handed alpha
Helix 20	AC2	R	61	64	Right-handed 310
Helix 21	AC3	R	65	66	Right-handed 310
Helix 22	AC4	R	67	95	Right-handed alpha
Helix 23	AC5	R	101	136	Right-handed alpha
Helix 24	AC6	R	139	144	Right-handed alpha
Helix 25	AC7	R	145	170	Right-handed alpha
Helix 26	AC8	R	170	176	Right-handed alpha
Helix 27	AC9	R	192	202	Right-handed alpha
Helix 28	AD1	R	204	222	Right-handed alpha
Helix 29	AD2	R	392	423	Right-handed alpha
Helix 30	AD3	R	432	439	Right-handed alpha
Helix 31	AD4	R	440	455	Right-handed alpha
Helix 32	AD5	R	457	471	Right-handed alpha

There are 13 sheets in PDB entry 7V69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	34	40	parallel
Strand 3	A	220	226	parallel
Strand 4	A	263	269	parallel
Strand 5	A	322	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	72	74	anti-parallel
Strand 3	B	79	82	anti-parallel
Strand 4	B	89	92	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	7	first strand
Strand 2	S	19	24	anti-parallel
Strand 3	S	78	82	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	95	anti-parallel
Strand 4	S	35	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	135	136	first strand
Strand 2	S	233	234	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	144	148	first strand
Strand 2	S	199	204	anti-parallel
Strand 3	S	191	196	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	174	177	first strand
Strand 2	S	162	167	anti-parallel
Strand 3	S	214	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V69

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V69