Analysis of interatomic Contacts of Structural Units in PDB entry:
7V6A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V6A entry

There are 5 chains in PDB entry 7V6A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	GLU 3	ASN 340
C	ALA 7	GLU 63
S	VAL 2	LEU 235
R	THR 29	GLN 471

There are 30 helices in PDB entry 7V6A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	202	205	Right-handed 310
Helix 4	AA4	A	211	216	Right-handed 310
Helix 5	AA5	A	241	255	Right-handed alpha
Helix 6	AA6	A	270	281	Right-handed alpha
Helix 7	AA7	A	295	308	Right-handed alpha
Helix 8	AA8	A	330	351	Right-handed alpha
Helix 9	AA9	B	4	26	Right-handed alpha
Helix 10	AB1	B	29	34	Right-handed alpha
Helix 11	AB2	C	10	24	Right-handed alpha
Helix 12	AB3	C	29	34	Right-handed alpha
Helix 13	AB4	C	34	42	Right-handed alpha
Helix 14	AB5	R	30	55	Right-handed alpha
Helix 15	AB6	R	55	60	Right-handed alpha
Helix 16	AB7	R	65	67	Right-handed 310
Helix 17	AB8	R	68	91	Right-handed alpha
Helix 18	AB9	R	92	94	Right-handed 310
Helix 19	AC1	R	101	136	Right-handed alpha
Helix 20	AC2	R	138	144	Right-handed alpha
Helix 21	AC3	R	145	165	Right-handed alpha
Helix 22	AC4	R	165	176	Right-handed alpha
Helix 23	AC5	R	192	204	Right-handed alpha
Helix 24	AC6	R	204	222	Right-handed alpha
Helix 25	AC7	R	392	413	Right-handed alpha
Helix 26	AC8	R	415	420	Right-handed alpha
Helix 27	AC9	R	431	441	Right-handed alpha
Helix 28	AD1	R	443	455	Right-handed alpha
Helix 29	AD2	R	457	463	Right-handed alpha
Helix 30	AD3	R	465	470	Right-handed alpha

There are 14 sheets in PDB entry 7V6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	222	parallel
Strand 5	A	263	265	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	268	269	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	79	82	anti-parallel
Strand 4	B	89	93	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	241	243	anti-parallel
Strand 3	B	250	253	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	307	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	6	7	first strand
Strand 2	S	17	22	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	118	119	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	93	99	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	143	146	first strand
Strand 2	S	200	204	anti-parallel
Strand 3	S	191	195	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	174	177	first strand
Strand 2	S	164	167	anti-parallel
Strand 3	S	214	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V6A

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V6A