Analysis of interatomic Contacts of Structural Units in PDB entry:
7V6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V6C entry

There are 6 chains in PDB entry 7V6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 8	ALA 1722
B	SER 5	ILE 311
E	U 1	G 5
F	C 15	U 21
C	A 0	G 20
D	C 0	C 20

There are 72 helices in PDB entry 7V6C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	33	45	Right-handed alpha
Helix 3	AA3	A	66	81	Right-handed alpha
Helix 4	AA4	A	89	97	Right-handed 310
Helix 5	AA5	A	98	109	Right-handed alpha
Helix 6	AA6	A	116	125	Right-handed alpha
Helix 7	AA7	A	141	145	Right-handed 310
Helix 8	AA8	A	148	156	Right-handed alpha
Helix 9	AA9	A	183	196	Right-handed alpha
Helix 10	AB1	A	232	252	Right-handed alpha
Helix 11	AB2	A	273	313	Right-handed alpha
Helix 12	AB3	A	316	345	Right-handed alpha
Helix 13	AB4	A	355	362	Right-handed alpha
Helix 14	AB5	A	364	378	Right-handed alpha
Helix 15	AB6	A	394	412	Right-handed alpha
Helix 16	AB7	A	437	452	Right-handed alpha
Helix 17	AB8	A	484	493	Right-handed alpha
Helix 18	AB9	A	510	534	Right-handed alpha
Helix 19	AC1	A	567	582	Right-handed alpha
Helix 20	AC2	A	598	606	Right-handed alpha
Helix 21	AC3	A	637	657	Right-handed alpha
Helix 22	AC4	A	667	680	Right-handed alpha
Helix 23	AC5	A	683	687	Right-handed 310
Helix 24	AC6	A	741	749	Right-handed alpha
Helix 25	AC7	A	792	810	Right-handed alpha
Helix 26	AC8	A	845	852	Right-handed alpha
Helix 27	AC9	A	862	869	Right-handed alpha
Helix 28	AD1	A	916	925	Right-handed alpha
Helix 29	AD2	A	983	1016	Right-handed alpha
Helix 30	AD3	A	1044	1048	Right-handed 310
Helix 31	AD4	A	1078	1084	Right-handed alpha
Helix 32	AD5	A	1087	1091	Right-handed 310
Helix 33	AD6	A	1103	1116	Right-handed alpha
Helix 34	AD7	A	1174	1182	Right-handed alpha
Helix 35	AD8	A	1183	1186	Right-handed 310
Helix 36	AD9	A	1190	1199	Right-handed alpha
Helix 37	AE1	A	1200	1204	Right-handed 310
Helix 38	AE2	A	1209	1232	Right-handed alpha
Helix 39	AE3	A	1236	1249	Right-handed alpha
Helix 40	AE4	A	1249	1260	Right-handed alpha
Helix 41	AE5	A	1285	1295	Right-handed alpha
Helix 42	AE6	A	1295	1300	Right-handed alpha
Helix 43	AE7	A	1303	1309	Right-handed alpha
Helix 44	AE8	A	1324	1339	Right-handed alpha
Helix 45	AE9	A	1348	1353	Right-handed alpha
Helix 46	AF1	A	1354	1356	Right-handed 310
Helix 47	AF2	A	1363	1382	Right-handed alpha
Helix 48	AF3	A	1382	1393	Right-handed alpha
Helix 49	AF4	A	1404	1408	Right-handed 310
Helix 50	AF5	A	1423	1430	Right-handed alpha
Helix 51	AF6	A	1432	1441	Right-handed alpha
Helix 52	AF7	A	1447	1455	Right-handed alpha
Helix 53	AF8	A	1467	1491	Right-handed alpha
Helix 54	AF9	A	1495	1508	Right-handed alpha
Helix 55	AG1	A	1508	1519	Right-handed alpha
Helix 56	AG2	A	1521	1525	Right-handed 310
Helix 57	AG3	A	1529	1547	Right-handed alpha
Helix 58	AG4	A	1551	1557	Right-handed alpha
Helix 59	AG5	A	1610	1628	Right-handed alpha
Helix 60	AG6	A	1629	1651	Right-handed alpha
Helix 61	AG7	A	1655	1663	Right-handed alpha
Helix 62	AG8	A	1701	1720	Right-handed alpha
Helix 63	AG9	B	6	18	Right-handed alpha
Helix 64	AH1	B	51	69	Right-handed alpha
Helix 65	AH2	B	95	108	Right-handed alpha
Helix 66	AH3	B	145	163	Right-handed alpha
Helix 67	AH4	B	189	198	Right-handed alpha
Helix 68	AH5	B	203	211	Right-handed alpha
Helix 69	AH6	B	220	227	Right-handed 310
Helix 70	AH7	B	231	244	Right-handed alpha
Helix 71	AH8	B	249	261	Right-handed alpha
Helix 72	AH9	B	295	311	Right-handed alpha

There are 13 sheets in PDB entry 7V6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	111	115	parallel
Strand 3	A	59	64	parallel
Strand 4	A	133	139	parallel
Strand 5	A	167	172	parallel
Strand 6	A	24	27	parallel
Strand 7	A	199	200	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	225	first strand
Strand 2	A	501	507	parallel
Strand 3	A	475	478	parallel
Strand 4	A	388	392	parallel
Strand 5	A	457	461	parallel
Strand 6	A	423	424	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	559	first strand
Strand 2	A	565	566	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	596	first strand
Strand 2	A	616	619	anti-parallel
Strand 3	A	630	631	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	706	first strand
Strand 2	A	1358	1362	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	772	first strand
Strand 2	A	775	781	anti-parallel
Strand 3	A	723	733	anti-parallel
Strand 4	A	786	789	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	772	first strand
Strand 2	A	775	781	anti-parallel
Strand 3	A	723	733	anti-parallel
Strand 4	A	753	758	anti-parallel
Strand 5	A	830	835	anti-parallel
Strand 6	A	843	844	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	820	first strand
Strand 2	A	1282	1283	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	939	944	first strand
Strand 2	A	893	899	anti-parallel
Strand 3	A	881	884	anti-parallel
Strand 4	A	976	979	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1070	1072	first strand
Strand 2	A	1691	1696	parallel
Strand 3	A	1683	1688	anti-parallel
Strand 4	A	1669	1670	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	43	48	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	120	first strand
Strand 2	B	127	134	anti-parallel
Strand 3	B	137	143	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	270	first strand
Strand 2	B	278	282	anti-parallel
Strand 3	B	290	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V6C