Analysis of interatomic Contacts of Structural Units in PDB entry:
7V6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V6I entry

There is 1 chain in PDB entry 7V6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 45SER 641
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7V6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 78Right-handed alpha
Helix 2
AA2
A
79 81Right-handed 310
Helix 3
AA3
A
120 124Right-handed 310
Helix 4
AA4
A
133 135Right-handed 310
Helix 5
AA5
A
195 199Right-handed 310
Helix 6
AA6
A
262 264Right-handed 310
Helix 7
AA7
A
265 270Right-handed alpha
Helix 8
AA8
A
301 306Right-handed alpha
Helix 9
AA9
A
323 331Right-handed alpha
Helix 10
AB1
A
419 423Right-handed 310
Helix 11
AB2
A
534 537Right-handed 310
Helix 12
AB3
A
564 568Right-handed 310
Helix 13
AB4
A
595 599Right-handed 310
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There are 8 sheets in PDB entry 7V6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
86 90parallel
Strand 3
A
113 118parallel
Strand 4
A
167 170parallel
Strand 5
A
222 229parallel
Strand 6
A
275 282parallel
Strand 7
A
336 338parallel
Strand 8
A
359 361parallel
Strand 9
A
408 410parallel
Strand 10
A
439 441parallel
Strand 11
A
464 466parallel
Strand 12
A
488 490parallel
Strand 13
A
511 514parallel
Strand 14
A
539 542parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
127 129parallel
Strand 3
A
173 176parallel
Strand 4
A
232 237parallel
Strand 5
A
285 290parallel
Strand 6
A
341 345parallel
Strand 7
A
364 366parallel
Strand 8
A
413 415parallel
Strand 9
A
444 446parallel
Strand 10
A
469 471parallel
Strand 11
A
493 496parallel
Strand 12
A
517 520parallel
Strand 13
A
545 547parallel
Strand 14
A
560 562parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 106first strand
Strand 2
A
152 165parallel
Strand 3
A
137 141anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 106first strand
Strand 2
A
152 165parallel
Strand 3
A
209 217parallel
Strand 4
A
248 254parallel
Strand 5
A
292 299parallel
Strand 6
A
350 353parallel
Strand 7
A
399 402parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
355 356parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
387 390anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
453 455parallel
Strand 3
A
478 479parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
460 461parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il