Analysis of interatomic Contacts of Structural Units in PDB entry:
7V6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V6S entry

There are 2 chains in PDB entry 7V6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 37SER 160
B
 ASN 37SER 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7V6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 52Right-handed alpha
Helix 2
AA2
A
67 81Right-handed alpha
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
145 150Right-handed alpha
Helix 6
AA6
B
38 52Right-handed alpha
Helix 7
AA7
B
67 81Right-handed alpha
Helix 8
AA8
B
87 92Right-handed alpha
Helix 9
AA9
B
99 103Right-handed 310
Helix 10
AB1
B
145 150Right-handed alpha
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There are 4 sheets in PDB entry 7V6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
65 66anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
108 111anti-parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
128 133anti-parallel
Strand 6
A
137 142anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
65 66anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
152 157anti-parallel
Strand 3
B
108 112anti-parallel
Strand 4
B
118 125anti-parallel
Strand 5
B
128 133anti-parallel
Strand 6
B
137 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il