Analysis of interatomic Contacts of Structural Units in PDB entry:
7V80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V80 entry

There are 2 chains in PDB entry 7V80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 330	SER 530
F	SER 19	ALA 614

There are 35 helices in PDB entry 7V80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	337	343	Right-handed alpha
Helix 2	AA2	A	365	371	Right-handed alpha
Helix 3	AA3	A	385	389	Right-handed 310
Helix 4	AA4	A	404	408	Right-handed 310
Helix 5	AA5	A	438	443	Right-handed alpha
Helix 6	AA6	F	21	53	Right-handed alpha
Helix 7	AA7	F	59	73	Right-handed alpha
Helix 8	AA8	F	75	80	Right-handed alpha
Helix 9	AA9	F	90	101	Right-handed alpha
Helix 10	AB1	F	109	129	Right-handed alpha
Helix 11	AB2	F	147	152	Right-handed alpha
Helix 12	AB3	F	158	172	Right-handed alpha
Helix 13	AB4	F	176	193	Right-handed alpha
Helix 14	AB5	F	199	205	Right-handed alpha
Helix 15	AB6	F	206	208	Right-handed 310
Helix 16	AB7	F	218	229	Right-handed alpha
Helix 17	AB8	F	233	252	Right-handed alpha
Helix 18	AB9	F	275	279	Right-handed 310
Helix 19	AC1	F	293	300	Right-handed alpha
Helix 20	AC2	F	303	319	Right-handed alpha
Helix 21	AC3	F	326	331	Right-handed alpha
Helix 22	AC4	F	365	385	Right-handed alpha
Helix 23	AC5	F	389	393	Right-handed 310
Helix 24	AC6	F	399	413	Right-handed alpha
Helix 25	AC7	F	414	421	Right-handed alpha
Helix 26	AC8	F	431	447	Right-handed alpha
Helix 27	AC9	F	449	466	Right-handed alpha
Helix 28	AD1	F	476	485	Right-handed alpha
Helix 29	AD2	F	503	508	Right-handed alpha
Helix 30	AD3	F	513	532	Right-handed alpha
Helix 31	AD4	F	538	542	Right-handed 310
Helix 32	AD5	F	548	559	Right-handed alpha
Helix 33	AD6	F	565	570	Right-handed alpha
Helix 34	AD7	F	583	588	Right-handed alpha
Helix 35	AD8	F	588	596	Right-handed alpha

There are 5 sheets in PDB entry 7V80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	402	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	133	first strand
Strand 2	F	141	142	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	263	first strand
Strand 2	F	487	488	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	352	first strand
Strand 2	F	355	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V80

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V80