Analysis of interatomic Contacts of Structural Units in PDB entry:
7V88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V88 entry

There are 5 chains in PDB entry 7V88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	ASP 1144
B	GLN 14	ASP 1144
C	GLN 14	ASP 1144
F	SER 19	ALA 614
G	SER 19	ALA 614

There are127 helices in PDB entry 7V88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	292	302	Right-handed alpha
Helix 2	AA2	A	336	341	Right-handed alpha
Helix 3	AA3	A	347	351	Right-handed 310
Helix 4	AA4	A	362	368	Right-handed alpha
Helix 5	AA5	A	381	386	Right-handed alpha
Helix 6	AA6	A	403	408	Right-handed 310
Helix 7	AA7	A	414	420	Right-handed alpha
Helix 8	AA8	A	735	742	Right-handed alpha
Helix 9	AA9	A	744	752	Right-handed alpha
Helix 10	AB1	A	753	755	Right-handed 310
Helix 11	AB2	A	757	781	Right-handed alpha
Helix 12	AB3	A	814	824	Right-handed alpha
Helix 13	AB4	A	864	883	Right-handed alpha
Helix 14	AB5	A	884	888	Right-handed 310
Helix 15	AB6	A	895	908	Right-handed alpha
Helix 16	AB7	A	911	917	Right-handed alpha
Helix 17	AB8	A	917	939	Right-handed alpha
Helix 18	AB9	A	943	963	Right-handed alpha
Helix 19	AC1	A	974	980	Right-handed alpha
Helix 20	AC2	A	983	1031	Right-handed alpha
Helix 21	AC3	A	1138	1143	Right-handed alpha
Helix 22	AC4	B	292	302	Right-handed alpha
Helix 23	AC5	B	336	341	Right-handed alpha
Helix 24	AC6	B	347	351	Right-handed 310
Helix 25	AC7	B	362	369	Right-handed alpha
Helix 26	AC8	B	381	385	Right-handed 310
Helix 27	AC9	B	403	408	Right-handed 310
Helix 28	AD1	B	415	420	Right-handed alpha
Helix 29	AD2	B	436	441	Right-handed alpha
Helix 30	AD3	B	566	570	Right-handed 310
Helix 31	AD4	B	736	741	Right-handed alpha
Helix 32	AD5	B	744	752	Right-handed alpha
Helix 33	AD6	B	756	781	Right-handed alpha
Helix 34	AD7	B	814	824	Right-handed alpha
Helix 35	AD8	B	864	883	Right-handed alpha
Helix 36	AD9	B	884	888	Right-handed 310
Helix 37	AE1	B	895	906	Right-handed alpha
Helix 38	AE2	B	911	917	Right-handed alpha
Helix 39	AE3	B	917	938	Right-handed alpha
Helix 40	AE4	B	943	963	Right-handed alpha
Helix 41	AE5	B	964	966	Right-handed 310
Helix 42	AE6	B	974	982	Right-handed alpha
Helix 43	AE7	B	983	1031	Right-handed alpha
Helix 44	AE8	B	1114	1116	Right-handed 310
Helix 45	AE9	B	1138	1144	Right-handed alpha
Helix 46	AF1	C	292	302	Right-handed alpha
Helix 47	AF2	C	336	341	Right-handed alpha
Helix 48	AF3	C	347	351	Right-handed 310
Helix 49	AF4	C	362	368	Right-handed alpha
Helix 50	AF5	C	381	386	Right-handed alpha
Helix 51	AF6	C	403	408	Right-handed 310
Helix 52	AF7	C	414	420	Right-handed alpha
Helix 53	AF8	C	436	441	Right-handed alpha
Helix 54	AF9	C	500	503	Right-handed 310
Helix 55	AG1	C	735	741	Right-handed alpha
Helix 56	AG2	C	744	752	Right-handed alpha
Helix 57	AG3	C	753	755	Right-handed 310
Helix 58	AG4	C	758	781	Right-handed alpha
Helix 59	AG5	C	814	824	Right-handed alpha
Helix 60	AG6	C	864	883	Right-handed alpha
Helix 61	AG7	C	884	888	Right-handed 310
Helix 62	AG8	C	895	906	Right-handed alpha
Helix 63	AG9	C	910	939	Right-handed alpha
Helix 64	AH1	C	943	963	Right-handed alpha
Helix 65	AH2	C	964	966	Right-handed 310
Helix 66	AH3	C	974	982	Right-handed alpha
Helix 67	AH4	C	983	1032	Right-handed alpha
Helix 68	AH5	C	1138	1144	Right-handed alpha
Helix 69	AH6	F	20	53	Right-handed alpha
Helix 70	AH7	F	55	79	Right-handed alpha
Helix 71	AH8	F	90	101	Right-handed alpha
Helix 72	AH9	F	109	129	Right-handed alpha
Helix 73	AI1	F	147	154	Right-handed alpha
Helix 74	AI2	F	158	172	Right-handed alpha
Helix 75	AI3	F	176	194	Right-handed alpha
Helix 76	AI4	F	198	205	Right-handed alpha
Helix 77	AI5	F	206	208	Right-handed 310
Helix 78	AI6	F	218	229	Right-handed alpha
Helix 79	AI7	F	233	252	Right-handed alpha
Helix 80	AI8	F	293	300	Right-handed alpha
Helix 81	AI9	F	303	319	Right-handed alpha
Helix 82	AJ1	F	326	331	Right-handed alpha
Helix 83	AJ2	F	365	385	Right-handed alpha
Helix 84	AJ3	F	389	393	Right-handed 310
Helix 85	AJ4	F	397	412	Right-handed alpha
Helix 86	AJ5	F	414	421	Right-handed alpha
Helix 87	AJ6	F	431	444	Right-handed alpha
Helix 88	AJ7	F	449	466	Right-handed alpha
Helix 89	AJ8	F	473	484	Right-handed alpha
Helix 90	AJ9	F	503	507	Right-handed 310
Helix 91	AK1	F	512	532	Right-handed alpha
Helix 92	AK2	F	538	542	Right-handed 310
Helix 93	AK3	F	547	559	Right-handed alpha
Helix 94	AK4	F	560	564	Right-handed 310
Helix 95	AK5	F	565	570	Right-handed alpha
Helix 96	AK6	F	581	588	Right-handed alpha
Helix 97	AK7	F	588	599	Right-handed alpha
Helix 98	AK8	G	20	53	Right-handed alpha
Helix 99	AK9	G	55	80	Right-handed alpha
Helix 100	AL1	G	90	101	Right-handed alpha
Helix 101	AL2	G	109	129	Right-handed alpha
Helix 102	AL3	G	147	154	Right-handed alpha
Helix 103	AL4	G	158	194	Right-handed alpha
Helix 104	AL5	G	198	204	Right-handed alpha
Helix 105	AL6	G	218	231	Right-handed alpha
Helix 106	AL7	G	233	252	Right-handed alpha
Helix 107	AL8	G	275	279	Right-handed 310
Helix 108	AL9	G	293	300	Right-handed alpha
Helix 109	AM1	G	303	319	Right-handed alpha
Helix 110	AM2	G	326	331	Right-handed alpha
Helix 111	AM3	G	365	386	Right-handed alpha
Helix 112	AM4	G	387	388	Right-handed 310
Helix 113	AM5	G	389	393	Right-handed 310
Helix 114	AM6	G	399	412	Right-handed alpha
Helix 115	AM7	G	414	421	Right-handed alpha
Helix 116	AM8	G	431	447	Right-handed alpha
Helix 117	AM9	G	449	465	Right-handed alpha
Helix 118	AN1	G	473	485	Right-handed alpha
Helix 119	AN2	G	498	502	Right-handed 310
Helix 120	AN3	G	503	507	Right-handed 310
Helix 121	AN4	G	513	532	Right-handed alpha
Helix 122	AN5	G	538	542	Right-handed 310
Helix 123	AN6	G	547	559	Right-handed alpha
Helix 124	AN7	G	560	564	Right-handed 310
Helix 125	AN8	G	565	570	Right-handed alpha
Helix 126	AN9	G	581	588	Right-handed alpha
Helix 127	AO1	G	588	599	Right-handed alpha

There are 48 sheets in PDB entry 7V88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	263	267	anti-parallel
Strand 4	A	89	96	anti-parallel
Strand 5	A	186	195	anti-parallel
Strand 6	A	198	207	anti-parallel
Strand 7	A	220	228	anti-parallel
Strand 8	A	36	37	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	563	565	parallel
Strand 3	C	571	575	anti-parallel
Strand 4	C	582	586	anti-parallel
Strand 5	C	544	552	anti-parallel
Strand 6	C	537	541	anti-parallel
Strand 7	C	323	324	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	269	277	anti-parallel
Strand 3	A	283	288	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	235	236	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	131	anti-parallel
Strand 6	A	166	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	235	236	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	239	240	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	317	first strand
Strand 2	A	590	597	anti-parallel
Strand 3	A	607	611	anti-parallel
Strand 4	A	646	649	anti-parallel
Strand 5	A	640	643	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	536	541	parallel
Strand 3	A	544	552	anti-parallel
Strand 4	A	583	586	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	392	401	anti-parallel
Strand 3	A	505	514	anti-parallel
Strand 4	A	429	435	anti-parallel
Strand 5	A	374	377	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	452	first strand
Strand 2	A	490	492	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	574	first strand
Strand 2	A	563	565	anti-parallel
Strand 3	B	42	43	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	658	first strand
Strand 2	A	691	695	parallel
Strand 3	A	668	671	anti-parallel
Strand 4	A	662	665	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	711	first strand
Strand 2	A	1072	1075	anti-parallel
Strand 3	A	1092	1095	anti-parallel
Strand 4	A	1100	1103	anti-parallel
Strand 5	A	1111	1112	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	726	first strand
Strand 2	A	1057	1068	anti-parallel
Strand 3	A	1045	1054	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	734	first strand
Strand 2	A	856	859	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1118	1120	first strand
Strand 2	A	1084	1088	anti-parallel
Strand 3	A	1079	1081	anti-parallel
Strand 4	A	1131	1132	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	61	65	anti-parallel
Strand 3	B	263	267	anti-parallel
Strand 4	B	89	94	anti-parallel
Strand 5	B	186	195	anti-parallel
Strand 6	B	198	207	anti-parallel
Strand 7	B	220	227	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	269	277	anti-parallel
Strand 3	B	283	288	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	121	anti-parallel
Strand 5	B	126	135	anti-parallel
Strand 6	B	158	170	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	317	first strand
Strand 2	B	590	597	anti-parallel
Strand 3	B	607	611	anti-parallel
Strand 4	B	646	649	anti-parallel
Strand 5	B	640	643	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	326	first strand
Strand 2	B	537	541	parallel
Strand 3	B	544	552	anti-parallel
Strand 4	B	582	586	anti-parallel
Strand 5	B	574	575	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	393	401	anti-parallel
Strand 3	B	505	512	anti-parallel
Strand 4	B	429	435	anti-parallel
Strand 5	B	374	377	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	491	492	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	472	first strand
Strand 2	B	486	487	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	C	42	43	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	653	first strand
Strand 2	B	691	694	parallel
Strand 3	B	668	671	anti-parallel
Strand 4	B	662	665	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	699	701	first strand
Strand 2	C	785	787	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	726	first strand
Strand 2	B	1057	1068	anti-parallel
Strand 3	B	1045	1054	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	731	734	first strand
Strand 2	B	856	859	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1118	1123	first strand
Strand 2	B	1084	1088	anti-parallel
Strand 3	B	1079	1081	anti-parallel
Strand 4	B	1131	1132	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1092	1095	first strand
Strand 2	B	1100	1103	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	263	267	anti-parallel
Strand 4	C	89	94	anti-parallel
Strand 5	C	186	195	anti-parallel
Strand 6	C	198	207	anti-parallel
Strand 7	C	220	227	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	269	277	anti-parallel
Strand 3	C	283	288	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	235	240	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	116	120	anti-parallel
Strand 5	C	126	135	anti-parallel
Strand 6	C	158	170	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	317	first strand
Strand 2	C	590	597	anti-parallel
Strand 3	C	607	611	anti-parallel
Strand 4	C	646	649	anti-parallel
Strand 5	C	640	643	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	356	first strand
Strand 2	C	392	401	anti-parallel
Strand 3	C	505	514	anti-parallel
Strand 4	C	429	435	anti-parallel
Strand 5	C	374	377	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	360	first strand
Strand 2	C	522	523	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	452	first strand
Strand 2	C	490	492	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	472	first strand
Strand 2	C	486	487	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	653	first strand
Strand 2	C	691	694	parallel
Strand 3	C	668	671	anti-parallel
Strand 4	C	662	665	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	711	first strand
Strand 2	C	1072	1074	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	715	726	first strand
Strand 2	C	1057	1068	anti-parallel
Strand 3	C	1045	1054	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	731	734	first strand
Strand 2	C	856	859	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1118	1120	first strand
Strand 2	C	1084	1088	anti-parallel
Strand 3	C	1079	1081	anti-parallel
Strand 4	C	1131	1132	parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1092	1095	first strand
Strand 2	C	1100	1104	anti-parallel
Strand 3	C	1107	1112	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	263	first strand
Strand 2	F	487	488	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	352	first strand
Strand 2	F	355	359	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	133	first strand
Strand 2	G	141	143	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	350	first strand
Strand 2	G	356	359	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 7V88

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V88